Literature DB >> 12519979

MOsDB: an integrated information resource for rice genomics.

Wojciech M Karlowski1, Heiko Schoof, Vijayalakshmi Janakiraman, Volker Stuempflen, Klaus F X Mayer.   

Abstract

The MIPS Rice (Oryza sativa) database (MOsDB; http://mips.gsf.de/proj/rice) provides a comprehensive data collection dedicated to the genome information of rice. Rice (O. sativa L.) is one of the most important food crops for over half the world's population and serves as a major model system in cereal genome research. MOsDB integrates data from two publicly available rice genomic sequences, O. sativa L. ssp. indica and O. sativa L. ssp. japonica. Besides regularly updated rice genome sequence information, MOsDB provides an integrated resource for associated analysis data, e.g. internal and external annotation information as well as a complex characterization of all annotated rice genes. The MOsDB web interface supports various search options and allows browsing the database content. MOsDB is continuously expanding to include an increasing range of data type and the growing amount of information on the rice genome.

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Year:  2003        PMID: 12519979      PMCID: PMC165520          DOI: 10.1093/nar/gkg073

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

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3.  Creating the gene ontology resource: design and implementation.

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Authors:  Heiko Schoof; Paolo Zaccaria; Heidrun Gundlach; Kai Lemcke; Stephen Rudd; Grigory Kolesov; Roland Arnold; H W Mewes; Klaus F X Mayer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Gramene: a resource for comparative grass genomics.

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6.  Ab initio gene finding in Drosophila genomic DNA.

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  10 in total

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Review 6.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

Review 7.  Comparative molecular biological analysis of membrane transport genes in organisms.

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8.  Comparative analysis of the receptor-like kinase family in Arabidopsis and rice.

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9.  MIPSPlantsDB--plant database resource for integrative and comparative plant genome research.

Authors:  Manuel Spannagl; Octave Noubibou; Dirk Haase; Li Yang; Heidrun Gundlach; Tobias Hindemitt; Kathrin Klee; Georg Haberer; Heiko Schoof; Klaus F X Mayer
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

10.  START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors.

Authors:  Kathrin Schrick; Diana Nguyen; Wojciech M Karlowski; Klaus F X Mayer
Journal:  Genome Biol       Date:  2004-05-27       Impact factor: 13.583

  10 in total

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