Literature DB >> 12519971

CATMA: a complete Arabidopsis GST database.

Mark L Crowe1, Carine Serizet, Vincent Thareau, Sébastien Aubourg, Pierre Rouzé, Pierre Hilson, Jim Beynon, Peter Weisbeek, Paul van Hummelen, Philippe Reymond, Javier Paz-Ares, Wilfried Nietfeld, Martin Trick.   

Abstract

The Complete Arabidopsis Transcriptome Micro Array (CATMA) database contains gene sequence tag (GST) and gene model sequences for over 70% of the predicted genes in the Arabidopsis thaliana genome as well as primer sequences for GST amplification and a wide range of supplementary information. All CATMA GST sequences are specific to the gene for which they were designed, and all gene models were predicted from a complete reannotation of the genome using uniform parameters. The database is searchable by sequence name, sequence homology or direct SQL query, and is available through the CATMA website at http://www.catma.org/.

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Year:  2003        PMID: 12519971      PMCID: PMC165518          DOI: 10.1093/nar/gkg071

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  The EMBL Nucleotide Sequence Database.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Evelyn Camon; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Nicole Redaschi; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.

Authors:  F Samson; V Brunaud; S Balzergue; B Dubreucq; L Lepiniec; G Pelletier; M Caboche; A Lecharny
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences.

Authors:  N Pavy; S Rombauts; P Déhais; C Mathé; D V Ramana; P Leroy; P Rouzé
Journal:  Bioinformatics       Date:  1999-11       Impact factor: 6.937

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

6.  Full-length messenger RNA sequences greatly improve genome annotation.

Authors:  Brian J Haas; Natalia Volfovsky; Christopher D Town; Maxim Troukhan; Nickolai Alexandrov; Kenneth A Feldmann; Richard B Flavell; Owen White; Steven L Salzberg
Journal:  Genome Biol       Date:  2002-05-30       Impact factor: 13.583

  6 in total
  78 in total

1.  FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Authors:  Franck Samson; Véronique Brunaud; Sylvain Duchêne; Yannick De Oliveira; Michel Caboche; Alain Lecharny; Sébastien Aubourg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.

Authors:  Delphine Samson; Fabrice Legeai; Emmanuelle Karsenty; Sébastien Reboux; Jean-Baptiste Veyrieras; Jeremy Just; Emmanuel Barillot
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Mutations in the Arabidopsis homolog of LST8/GβL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days.

Authors:  Manon Moreau; Marianne Azzopardi; Gilles Clément; Thomas Dobrenel; Chloé Marchive; Charlotte Renne; Marie-Laure Martin-Magniette; Ludivine Taconnat; Jean-Pierre Renou; Christophe Robaglia; Christian Meyer
Journal:  Plant Cell       Date:  2012-02-03       Impact factor: 11.277

4.  A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth.

Authors:  Nawroz Abdulrazzak; Brigitte Pollet; Jürgen Ehlting; Kim Larsen; Carole Asnaghi; Sebastien Ronseau; Caroline Proux; Mathieu Erhardt; Virginie Seltzer; Jean-Pierre Renou; Pascaline Ullmann; Markus Pauly; Catherine Lapierre; Danièle Werck-Reichhart
Journal:  Plant Physiol       Date:  2005-12-23       Impact factor: 8.340

5.  Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts.

Authors:  Stéphane Bentolila; Walter Knight; Maureen Hanson
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

6.  Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria.

Authors:  Stéphane Bentolila; Arianne M Babina; Arnaud Germain; Maureen R Hanson
Journal:  RNA Biol       Date:  2013-06-18       Impact factor: 4.652

7.  The Arabidopsis abscisic acid catabolic gene CYP707A2 plays a key role in nitrate control of seed dormancy.

Authors:  Theodoros Matakiadis; Alessandro Alboresi; Yusuke Jikumaru; Kiyoshi Tatematsu; Olivier Pichon; Jean-Pierre Renou; Yuji Kamiya; Eiji Nambara; Hoai-Nam Truong
Journal:  Plant Physiol       Date:  2008-12-12       Impact factor: 8.340

8.  Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity.

Authors:  Mélanie Jubault; Christine Lariagon; Ludivine Taconnat; Jean-Pierre Renou; Antoine Gravot; Régine Delourme; Maria J Manzanares-Dauleux
Journal:  Funct Integr Genomics       Date:  2013-02-19       Impact factor: 3.410

9.  RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.

Authors:  Xiaowen Shi; Arnaud Germain; Maureen R Hanson; Stéphane Bentolila
Journal:  Plant Physiol       Date:  2015-11-17       Impact factor: 8.340

10.  Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity.

Authors:  Ricardo A Chávez Montes; Philippe Ranocha; Yves Martinez; Zoran Minic; Lise Jouanin; Mélanie Marquis; Luc Saulnier; Lynette M Fulton; Christopher S Cobbett; Frédérique Bitton; Jean-Pierre Renou; Alain Jauneau; Deborah Goffner
Journal:  Plant Physiol       Date:  2008-03-14       Impact factor: 8.340

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