Literature DB >> 12509467

Autoregulation in the biosynthesis of ribosomes.

Yu Zhao1, Jung-Hoon Sohn, Jonathan R Warner.   

Abstract

The synthesis of ribosomes in Saccharomyces cerevisiae consumes a prodigious amount of the cell's resources and, consequently, is tightly regulated. The rate of ribosome synthesis responds not only to nutritional cues but also to signals dependent on other macromolecular pathways of the cell, e.g., a defect in the secretory pathway leads to severe repression of transcription of both rRNA and ribosomal protein genes. A search for mutants that interrupted this repression revealed, surprisingly, that inactivation of RPL1B, one of a pair of genes encoding the 60S ribosomal protein L1, almost completely blocked the repression of rRNA and ribosomal protein gene transcription that usually follows a defect in the secretory pathway. Further experiments showed that almost any mutation leading to a defect in 60S subunit synthesis had the same effect, whereas mutations affecting 40S subunit synthesis did not. Although one might suspect that this effect would be due to a decrease in the initiation of translation or to the presence of half-mers, i.e., polyribosomes awaiting a 60S subunit, our data show that this is not the case. Rather, a variety of experiments suggest that some aspect of the production of defective 60S particles or, more likely, their breakdown suppresses the signal generated by a defect in the secretory pathway that represses ribosome synthesis.

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Year:  2003        PMID: 12509467      PMCID: PMC151547          DOI: 10.1128/MCB.23.2.699-707.2003

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  38 in total

Review 1.  Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; P Linder; J de La Cruz
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  Repression of ribosome and tRNA synthesis in secretion-defective cells is signaled by a novel branch of the cell integrity pathway.

Authors:  Y Li; R D Moir; I K Sethy-Coraci; J R Warner; I M Willis
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

Review 3.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

4.  Isolation and functional characterization of a temperature-sensitive mutant of the yeast Saccharomyces cerevisiae in translation initiation factor eIF5: an eIF5-dependent cell-free translation system.

Authors:  T Maiti; S Das; U Maitra
Journal:  Gene       Date:  2000-02-22       Impact factor: 3.688

5.  Regulation of splicing at an intermediate step in the formation of the spliceosome.

Authors:  J Vilardell; J R Warner
Journal:  Genes Dev       Date:  1994-01       Impact factor: 11.361

6.  Factors affecting nuclear export of the 60S ribosomal subunit in vivo.

Authors:  T Stage-Zimmermann; U Schmidt; P A Silver
Journal:  Mol Biol Cell       Date:  2000-11       Impact factor: 4.138

7.  Nuclear export of the small ribosomal subunit requires the ran-GTPase cycle and certain nucleoporins.

Authors:  T I Moy; P A Silver
Journal:  Genes Dev       Date:  1999-08-15       Impact factor: 11.361

8.  Purified yeast translational initiation factor eIF-3 is an RNA-binding protein complex that contains the PRT1 protein.

Authors:  T Naranda; S E MacMillan; J W Hershey
Journal:  J Biol Chem       Date:  1994-12-23       Impact factor: 5.157

9.  Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit.

Authors:  J H Ho; G Kallstrom; A W Johnson
Journal:  J Cell Biol       Date:  2000-11-27       Impact factor: 10.539

10.  The yeast NOP4 gene product is an essential nucleolar protein required for pre-rRNA processing and accumulation of 60S ribosomal subunits.

Authors:  C Sun; J L Woolford
Journal:  EMBO J       Date:  1994-07-01       Impact factor: 11.598

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  34 in total

Review 1.  Aging and TOR: interwoven in the fabric of life.

Authors:  Zelton Dave Sharp
Journal:  Cell Mol Life Sci       Date:  2010-10-21       Impact factor: 9.261

2.  Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.

Authors:  Matthew J Brauer; Curtis Huttenhower; Edoardo M Airoldi; Rachel Rosenstein; John C Matese; David Gresham; Viktor M Boer; Olga G Troyanskaya; David Botstein
Journal:  Mol Biol Cell       Date:  2007-10-24       Impact factor: 4.138

3.  Suprainduction of p53 by disruption of 40S and 60S ribosome biogenesis leads to the activation of a novel G2/M checkpoint.

Authors:  Stefano Fumagalli; Vasily V Ivanenkov; Teng Teng; George Thomas
Journal:  Genes Dev       Date:  2012-05-15       Impact factor: 11.361

Review 4.  Aging and cancer: can mTOR inhibitors kill two birds with one drug?

Authors:  Zelton Dave Sharp; Arlan Richardson
Journal:  Target Oncol       Date:  2011-03-11       Impact factor: 4.493

5.  Decoupling of Rates of Protein Synthesis from Cell Expansion Leads to Supergrowth.

Authors:  Benjamin D Knapp; Pascal Odermatt; Enrique R Rojas; Wenpeng Cheng; Xiangwei He; Kerwyn Casey Huang; Fred Chang
Journal:  Cell Syst       Date:  2019-11-06       Impact factor: 10.304

6.  Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae.

Authors:  Kristan K Steffen; Mark A McCormick; Kim M Pham; Vivian L MacKay; Joe R Delaney; Christopher J Murakami; Matt Kaeberlein; Brian K Kennedy
Journal:  Genetics       Date:  2012-02-29       Impact factor: 4.562

7.  Nutritional homeostasis in batch and steady-state culture of yeast.

Authors:  Alok J Saldanha; Matthew J Brauer; David Botstein
Journal:  Mol Biol Cell       Date:  2004-07-07       Impact factor: 4.138

8.  Cryptococcus neoformans gene expression during experimental cryptococcal meningitis.

Authors:  B R Steen; S Zuyderduyn; D L Toffaletti; M Marra; S J M Jones; J R Perfect; J Kronstad
Journal:  Eukaryot Cell       Date:  2003-12

9.  Actin-related protein Arp6 influences H2A.Z-dependent and -independent gene expression and links ribosomal protein genes to nuclear pores.

Authors:  Takahito Yoshida; Kenji Shimada; Yukako Oma; Véronique Kalck; Kazumi Akimura; Angela Taddei; Hitoshi Iwahashi; Kazuto Kugou; Kunihiro Ohta; Susan M Gasser; Masahiko Harata
Journal:  PLoS Genet       Date:  2010-04-15       Impact factor: 5.917

10.  Widespread impact of nonsense-mediated mRNA decay on the yeast intronome.

Authors:  Shakir Sayani; Michael Janis; Chrissie Young Lee; Isabelle Toesca; Guillaume F Chanfreau
Journal:  Mol Cell       Date:  2008-08-08       Impact factor: 17.970

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