Literature DB >> 12508121

The DNA sequence and analysis of human chromosome 14.

Roland Heilig1, Ralph Eckenberg, Jean-Louis Petit, Núria Fonknechten, Corinne Da Silva, Laurence Cattolico, Michaël Levy, Valérie Barbe, Véronique de Berardinis, Abel Ureta-Vidal, Eric Pelletier, Virginie Vico, Véronique Anthouard, Lee Rowen, Anup Madan, Shizhen Qin, Hui Sun, Hui Du, Kymberlie Pepin, François Artiguenave, Catherine Robert, Corinne Cruaud, Thomas Brüls, Olivier Jaillon, Lucie Friedlander, Gaelle Samson, Philippe Brottier, Susan Cure, Béatrice Ségurens, Franck Anière, Sylvie Samain, Hervé Crespeau, Nissa Abbasi, Nathalie Aiach, Didier Boscus, Rachel Dickhoff, Monica Dors, Ivan Dubois, Cynthia Friedman, Michel Gouyvenoux, Rose James, Anuradha Madan, Barbara Mairey-Estrada, Sophie Mangenot, Nathalie Martins, Manuela Ménard, Sophie Oztas, Amber Ratcliffe, Tristan Shaffer, Barbara Trask, Benoit Vacherie, Chadia Bellemere, Caroline Belser, Marielle Besnard-Gonnet, Delphine Bartol-Mavel, Magali Boutard, Stéphanie Briez-Silla, Stephane Combette, Virginie Dufossé-Laurent, Carolyne Ferron, Christophe Lechaplais, Claudine Louesse, Delphine Muselet, Ghislaine Magdelenat, Emilie Pateau, Emmanuelle Petit, Peggy Sirvain-Trukniewicz, Arnaud Trybou, Nathalie Vega-Czarny, Elodie Bataille, Elodie Bluet, Isabelle Bordelais, Maria Dubois, Corinne Dumont, Thomas Guérin, Sébastien Haffray, Rachid Hammadi, Jacqueline Muanga, Virginie Pellouin, Dominique Robert, Edith Wunderle, Gilbert Gauguet, Alice Roy, Laurent Sainte-Marthe, Jean Verdier, Claude Verdier-Discala, LaDeana Hillier, Lucinda Fulton, John McPherson, Fumihiko Matsuda, Richard Wilson, Claude Scarpelli, Gábor Gyapay, Patrick Wincker, William Saurin, Francis Quétier, Robert Waterston, Leroy Hood, Jean Weissenbach.   

Abstract

Chromosome 14 is one of five acrocentric chromosomes in the human genome. These chromosomes are characterized by a heterochromatic short arm that contains essentially ribosomal RNA genes, and a euchromatic long arm in which most, if not all, of the protein-coding genes are located. The finished sequence of human chromosome 14 comprises 87,410,661 base pairs, representing 100% of its euchromatic portion, in a single continuous segment covering the entire long arm with no gaps. Two loci of crucial importance for the immune system, as well as more than 60 disease genes, have been localized so far on chromosome 14. We identified 1,050 genes and gene fragments, and 393 pseudogenes. On the basis of comparisons with other vertebrate genomes, we estimate that more than 96% of the chromosome 14 genes have been annotated. From an analysis of the CpG island occurrences, we estimate that 70% of these annotated genes are complete at their 5' end.

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Year:  2003        PMID: 12508121     DOI: 10.1038/nature01348

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  30 in total

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Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

2.  The Ensembl automatic gene annotation system.

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Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

3.  ESTGenes: alternative splicing from ESTs in Ensembl.

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Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

4.  Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1.

Authors:  Stephanie J Namciu; Richard D Friedman; Mark D Marsden; Lourdes M Sarausad; Christine L Jasoni; R E K Fournier
Journal:  Mamm Genome       Date:  2004-03       Impact factor: 2.957

5.  Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection.

Authors:  Betina M Porcel; Olivier Delfour; Vanina Castelli; Veronique De Berardinis; Lucie Friedlander; Corinne Cruaud; Abel Ureta-Vidal; Claude Scarpelli; Patrick Wincker; Vincent Schächter; William Saurin; Gabor Gyapay; Marcel Salanoubat; Jean Weissenbach
Journal:  Genome Res       Date:  2004-02-12       Impact factor: 9.043

6.  BEGAIN: a novel imprinted gene that generates paternally expressed transcripts in a tissue- and promoter-specific manner in sheep.

Authors:  Maria A Smit; Xavier Tordoir; Gabor Gyapay; Noelle E Cockett; Michel Georges; Carole Charlier
Journal:  Mamm Genome       Date:  2005-10-29       Impact factor: 2.957

7.  Gene discovery at the human T-cell receptor alpha/delta locus.

Authors:  Marsha R Haynes; Gillian E Wu
Journal:  Immunogenetics       Date:  2006-12-13       Impact factor: 2.846

8.  The DNA sequence and analysis of human chromosome 13.

Authors:  A Dunham; L H Matthews; J Burton; J L Ashurst; K L Howe; K J Ashcroft; D M Beare; D C Burford; S E Hunt; S Griffiths-Jones; M C Jones; S J Keenan; K Oliver; C E Scott; R Ainscough; J P Almeida; K D Ambrose; D T Andrews; R I S Ashwell; A K Babbage; C L Bagguley; J Bailey; R Bannerjee; K F Barlow; K Bates; H Beasley; C P Bird; S Bray-Allen; A J Brown; J Y Brown; W Burrill; C Carder; N P Carter; J C Chapman; M E Clamp; S Y Clark; G Clarke; C M Clee; S C M Clegg; V Cobley; J E Collins; N Corby; G J Coville; P Deloukas; P Dhami; I Dunham; M Dunn; M E Earthrowl; A G Ellington; L Faulkner; A G Frankish; J Frankland; L French; P Garner; J Garnett; J G R Gilbert; C J Gilson; J Ghori; D V Grafham; S M Gribble; C Griffiths; R E Hall; S Hammond; J L Harley; E A Hart; P D Heath; P J Howden; E J Huckle; P J Hunt; A R Hunt; C Johnson; D Johnson; M Kay; A M Kimberley; A King; G K Laird; C J Langford; S Lawlor; D A Leongamornlert; D M Lloyd; C Lloyd; J E Loveland; J Lovell; S Martin; M Mashreghi-Mohammadi; S J McLaren; A McMurray; S Milne; M J F Moore; T Nickerson; S A Palmer; A V Pearce; A I Peck; S Pelan; B Phillimore; K M Porter; C M Rice; S Searle; H K Sehra; R Shownkeen; C D Skuce; M Smith; C A Steward; N Sycamore; J Tester; D W Thomas; A Tracey; A Tromans; B Tubby; M Wall; J M Wallis; A P West; S L Whitehead; D L Willey; L Wilming; P W Wray; M W Wright; L Young; A Coulson; R Durbin; T Hubbard; J E Sulston; S Beck; D R Bentley; J Rogers; M T Ross
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

9.  Human chromosome 7: DNA sequence and biology.

Authors:  Stephen W Scherer; Joseph Cheung; Jeffrey R MacDonald; Lucy R Osborne; Kazuhiko Nakabayashi; Jo-Anne Herbrick; Andrew R Carson; Layla Parker-Katiraee; Jennifer Skaug; Razi Khaja; Junjun Zhang; Alexander K Hudek; Martin Li; May Haddad; Gavin E Duggan; Bridget A Fernandez; Emiko Kanematsu; Simone Gentles; Constantine C Christopoulos; Sanaa Choufani; Dorota Kwasnicka; Xiangqun H Zheng; Zhongwu Lai; Deborah Nusskern; Qing Zhang; Zhiping Gu; Fu Lu; Susan Zeesman; Malgorzata J Nowaczyk; Ikuko Teshima; David Chitayat; Cheryl Shuman; Rosanna Weksberg; Elaine H Zackai; Theresa A Grebe; Sarah R Cox; Susan J Kirkpatrick; Nazneen Rahman; Jan M Friedman; Henry H Q Heng; Pier Giuseppe Pelicci; Francesco Lo-Coco; Elena Belloni; Lisa G Shaffer; Barbara Pober; Cynthia C Morton; James F Gusella; Gail A P Bruns; Bruce R Korf; Bradley J Quade; Azra H Ligon; Heather Ferguson; Anne W Higgins; Natalia T Leach; Steven R Herrick; Emmanuelle Lemyre; Chantal G Farra; Hyung-Goo Kim; Anne M Summers; Karen W Gripp; Wendy Roberts; Peter Szatmari; Elizabeth J T Winsor; Karl-Heinz Grzeschik; Ahmed Teebi; Berge A Minassian; Juha Kere; Lluis Armengol; Miguel Angel Pujana; Xavier Estivill; Michael D Wilson; Ben F Koop; Sabrina Tosi; Gudrun E Moore; Andrew P Boright; Eitan Zlotorynski; Batsheva Kerem; Peter M Kroisel; Erwin Petek; David G Oscier; Sarah J Mould; Hartmut Döhner; Konstanze Döhner; Johanna M Rommens; John B Vincent; J Craig Venter; Peter W Li; Richard J Mural; Mark D Adams; Lap-Chee Tsui
Journal:  Science       Date:  2003-04-10       Impact factor: 47.728

10.  Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty.

Authors:  Mark S Longo; Dawn M Carone; Eric D Green; Michael J O'Neill; Rachel J O'Neill
Journal:  BMC Genomics       Date:  2009-07-24       Impact factor: 3.969

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