Literature DB >> 12504849

Characterization and imprinting status of OBPH1/Obph1 gene: implications for an extended imprinting domain in human and mouse.

Ken Higashimoto1, Hidenobu Soejima, Hitomi Yatsuki, Keiichiro Joh, Michiko Uchiyama, Yayoi Obata, Ryuichi Ono, Youdong Wang, Zhenghan Xin, Xike Zhu, Sadahiko Masuko, Fumitoshi Ishino, Izuho Hatada, Yoshihiro Jinno, Tsuyoshi Iwasaka, Takeshi Katsuki, Tsunehiro Mukai.   

Abstract

Human 11p15.5, as well as its orthologous mouse 7F4/F5, is known as the imprinting domain extending from IPL/Ipl to H19. OBPH1 and Obph1 are located beyond the presumed imprinting boundary on the IPL/Ipl side. We determined full-length cDNAs and complete genomic structures of both orthologues. We also investigated their precise imprinting and methylation status. The orthologues resembled each other in genomic structure and in the position of the 5' CpG island and were expressed ubiquitously. OBPH1 and Obph1 were predominantly expressed from the maternal allele only in placenta, with hypo- and not differentially methylated 5' CpG islands in both species. These results suggested that the imprinting domain would extend beyond the presumed imprinting boundary and that methylation of the 5' CpG island was not associated with the imprinting status in either species. It remains to be elucidated whether the gene is under the control of the KIP2/LIT1 subdomain or is regulated by a specific mechanism. Analysis of the precise genomic sequence around the region should help resolve this question.

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Year:  2002        PMID: 12504849     DOI: 10.1006/geno.2002.7006

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  11 in total

1.  Identification and resolution of artifacts in the interpretation of imprinted gene expression.

Authors:  Charlotte Proudhon; Déborah Bourc'his
Journal:  Brief Funct Genomics       Date:  2010-09-08       Impact factor: 4.241

2.  Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation.

Authors:  Purnima Singh; Xiwei Wu; Dong-Hoon Lee; Arthur X Li; Tibor A Rauch; Gerd P Pfeifer; Jeffrey R Mann; Piroska E Szabó
Journal:  Mol Cell Biol       Date:  2011-02-14       Impact factor: 4.272

3.  Heterozygous/dispermic complete mole confers a significantly higher risk for post-molar gestational trophoblastic disease.

Authors:  Xing-Zheng Zheng; Xu-Ying Qin; Su-Wen Chen; Peng Wang; Yang Zhan; Ping-Ping Zhong; Natalia Buza; Yu-Lan Jin; Bing-Quan Wu; Pei Hui
Journal:  Mod Pathol       Date:  2020-05-13       Impact factor: 7.842

Review 4.  Bridging the molecular and biological functions of the oxysterol-binding protein family.

Authors:  Antonietta Pietrangelo; Neale D Ridgway
Journal:  Cell Mol Life Sci       Date:  2018-03-13       Impact factor: 9.261

5.  Biallelic expression of HRAS and MUCDHL in human and mouse.

Authors:  Michael Goldberg; Michelle Wei; Luwa Yuan; Vundavalli V Murty; Benjamin Tycko
Journal:  Hum Genet       Date:  2003-02-14       Impact factor: 4.132

6.  Role of DNA methylation and histone H3 lysine 27 methylation in tissue-specific imprinting of mouse Grb10.

Authors:  Yoko Yamasaki-Ishizaki; Tomohiko Kayashima; Christophe K Mapendano; Hidenobu Soejima; Tohru Ohta; Hideaki Masuzaki; Akira Kinoshita; Takeshi Urano; Ko-ichiro Yoshiura; Naomichi Matsumoto; Tadayuki Ishimaru; Tsunehiro Mukai; Norio Niikawa; Tatsuya Kishino
Journal:  Mol Cell Biol       Date:  2006-11-13       Impact factor: 4.272

7.  Loss of CpG methylation is strongly correlated with loss of histone H3 lysine 9 methylation at DMR-LIT1 in patients with Beckwith-Wiedemann syndrome.

Authors:  Ken Higashimoto; Takeshi Urano; Kazumitsu Sugiura; Hitomi Yatsuki; Keiichiro Joh; Wei Zhao; Mayumi Iwakawa; Hirofumi Ohashi; Mitsuo Oshimura; Norio Niikawa; Tsunehiro Mukai; Hidenobu Soejima
Journal:  Am J Hum Genet       Date:  2003-08-29       Impact factor: 11.025

Review 8.  A survey of tissue-specific genomic imprinting in mammals.

Authors:  Adam R Prickett; Rebecca J Oakey
Journal:  Mol Genet Genomics       Date:  2012-07-21       Impact factor: 3.291

9.  Genome-wide assessment of imprinted expression in human cells.

Authors:  Lisanne Morcos; Bing Ge; Vonda Koka; Kevin C L Lam; Dmitry K Pokholok; Kevin L Gunderson; Alexandre Montpetit; Dominique J Verlaan; Tomi Pastinen
Journal:  Genome Biol       Date:  2011-03-21       Impact factor: 13.583

10.  Chromosome-wide identification of novel imprinted genes using microarrays and uniparental disomies.

Authors:  Reiner Schulz; Trevelyan R Menheniott; Kathryn Woodfine; Andrew J Wood; Jonathan D Choi; Rebecca J Oakey
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971

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