Literature DB >> 12499311

InterPreTS: protein interaction prediction through tertiary structure.

Patrick Aloy1, Robert B Russell.   

Abstract

SUMMARY: InterPreTS (Interaction Prediction through Tertiary Structure) is a web-based version of our method for predicting protein-protein interactions (Aloy and Russell, 2002, PROC: Natl Acad. Sci. USA, 99, 5896-5901). Given a pair of query sequences, we first search for homologues in a database of interacting domains (DBID) of known three-dimensional complex structures. Pairs of sequences homologous to a known interacting pair are scored for how well they preserve the atomic contacts at the interaction interface. InterPreTS includes a useful interface for visualising molecular details of any predicted interaction. AVAILABILITY: http://www.russell.embl.de/interprets.

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Year:  2003        PMID： 12499311     DOI： 10.1093/bioinformatics/19.1.161

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  68 in total

1.  Structure-based method for analyzing protein-protein interfaces.

Authors:  Ying Gao; Renxiao Wang; Luhua Lai
Journal:  J Mol Model       Date:  2003-11-22       Impact factor: 1.810

2.  MODBASE, a database of annotated comparative protein structure models, and associated resources.

Authors:  Ursula Pieper; Narayanan Eswar; Hannes Braberg; M S Madhusudhan; Fred P Davis; Ashley C Stuart; Nebojsa Mirkovic; Andrea Rossi; Marc A Marti-Renom; Andras Fiser; Ben Webb; Daniel Greenblatt; Conrad C Huang; Thomas E Ferrin; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

4.  The differential strain virulence of the candidate toxins of Photorhabdus akhurstii can be correlated with their inter-strain gene sequence diversity.

Authors:  Tushar K Dutta; Chetna Mathur; Abhishek Mandal; Vishal S Somvanshi
Journal:  3 Biotech       Date:  2020-06-11       Impact factor: 2.406

5.  LTHREADER: prediction of extracellular ligand-receptor interactions in cytokines using localized threading.

Authors:  Vinay Pulim; Jadwiga Bienkowska; Bonnie Berger
Journal:  Protein Sci       Date:  2007-12-20       Impact factor: 6.725

Review 6.  Computational prediction of protein-protein interactions.

Authors:  Lucy Skrabanek; Harpreet K Saini; Gary D Bader; Anton J Enright
Journal:  Mol Biotechnol       Date:  2007-08-14       Impact factor: 2.695

7.  M-TASSER: an algorithm for protein quaternary structure prediction.

Authors:  Huiling Chen; Jeffrey Skolnick
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

8.  Optimization of electrostatic interactions in protein-protein complexes.

Authors:  Kelly Brock; Kemper Talley; Kacey Coley; Petras Kundrotas; Emil Alexov
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

9.  On the analysis of protein-protein interactions via knowledge-based potentials for the prediction of protein-protein docking.

Authors:  Elisenda Feliu; Patrick Aloy; Baldo Oliva
Journal:  Protein Sci       Date:  2011-03       Impact factor: 6.725

10.  Charged residues at protein interaction interfaces: unexpected conservation and orchestrated divergence.

Authors:  Nan Zhao; Bin Pang; Chi-Ren Shyu; Dmitry Korkin
Journal:  Protein Sci       Date:  2011-06-02       Impact factor: 6.725
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