Literature DB >> 12490701

The phylogenetic distribution of bacterial ribonucleases.

Ciarán Condon1, Harald Putzer.   

Abstract

Ribonucleases play key, often essential, roles in cellular metabolism. Nineteen ribonuclease activities, from 22 different proteins, have so far been described in bacteria, the majority of them from either Escherichia coli or Bacillus subtilis. Here we examine the phylogenetic distribution of all of these ribonucleases in 50 eubacterial and archaeal species whose genomes have been completely sequenced, with particular emphasis on the endoribonucleases. Although some enzymes are very highly conserved throughout evolution, there appears to be no truly universal ribonuclease. While some organisms, like E.coli, have a large selection of ribonucleases, many with overlapping functions, others seem to have relatively few or have many that remain to be discovered.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12490701      PMCID: PMC140075          DOI: 10.1093/nar/gkf691

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  65 in total

Review 1.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

Authors:  Y Zuo; M P Deutscher
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

2.  The plant tRNA 3' processing enzyme has a broad substrate spectrum.

Authors:  S Schiffer; M Helm; A Théobald-Dietrich; R Giegé; A Marchfelder
Journal:  Biochemistry       Date:  2001-07-27       Impact factor: 3.162

3.  Transcription of glycolytic genes and operons in Bacillus subtilis: evidence for the presence of multiple levels of control of the gapA operon.

Authors:  H Ludwig; G Homuth; M Schmalisch; F M Dyka; M Hecker; J Stülke
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

Review 4.  A natural classification of ribonucleases.

Authors:  L Aravind; E V Koonin
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

5.  RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

Authors:  Z Li; S Pandit; M P Deutscher
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

6.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

7.  Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function.

Authors:  C Condon; D Brechemier-Baey; B Beltchev; M Grunberg-Manago; H Putzer
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

8.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

9.  Endoribonuclease RNase III is essential in Bacillus subtilis.

Authors:  M A Herskovitz; D H Bechhofer
Journal:  Mol Microbiol       Date:  2000-12       Impact factor: 3.501

10.  The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5' end.

Authors:  C Portier; L Dondon; M Grunberg-Manago; P Régnier
Journal:  EMBO J       Date:  1987-07       Impact factor: 11.598

View more
  66 in total

1.  Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria.

Authors:  Soraya Aït-Bara; Agamemnon J Carpousis
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

2.  Quaternary structure and biochemical properties of mycobacterial RNase E/G.

Authors:  Mirijam-Elisabeth Zeller; Agnes Csanadi; Andras Miczak; Thierry Rose; Thierry Bizebard; Vladimir R Kaberdin
Journal:  Biochem J       Date:  2007-04-01       Impact factor: 3.857

3.  The roles of individual domains of RNase R in substrate binding and exoribonuclease activity. The nuclease domain is sufficient for digestion of structured RNA.

Authors:  Helen A Vincent; Murray P Deutscher
Journal:  J Biol Chem       Date:  2008-11-11       Impact factor: 5.157

4.  Co-evolution of tRNA 3' trailer sequences with 3' processing enzymes in bacteria.

Authors:  Zhongwei Li; Xin Gong; Vedang H Joshi; Muxin Li
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

5.  Substrate binding and active site residues in RNases E and G: role of the 5'-sensor.

Authors:  Stephen M Garrey; Michaela Blech; Jenna L Riffell; Janet S Hankins; Leigh M Stickney; Melinda Diver; Ying-Han Roger Hsu; Vitharani Kunanithy; George A Mackie
Journal:  J Biol Chem       Date:  2009-09-24       Impact factor: 5.157

6.  Identification and analysis of Escherichia coli ribonuclease E dominant-negative mutants.

Authors:  Karoline J Briegel; Asmaa Baker; Chaitanya Jain
Journal:  Genetics       Date:  2005-10-03       Impact factor: 4.562

7.  Development, antibiotic production, and ribosome assembly in Streptomyces venezuelae are impacted by RNase J and RNase III deletion.

Authors:  Stephanie E Jones; Vivian Leong; Joaquin Ortega; Marie A Elliot
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

8.  Pyrazinoic Acid Inhibits a Bifunctional Enzyme in Mycobacterium tuberculosis.

Authors:  Moses Njire; Na Wang; Bangxing Wang; Yaoju Tan; Xingshan Cai; Yanwen Liu; Julius Mugweru; Jintao Guo; H M Adnan Hameed; Shouyong Tan; Jianxiong Liu; Wing Wai Yew; Eric Nuermberger; Gyanu Lamichhane; Jinsong Liu; Tianyu Zhang
Journal:  Antimicrob Agents Chemother       Date:  2017-06-27       Impact factor: 5.191

9.  The Phosphorolytic Exoribonucleases Polynucleotide Phosphorylase and RNase PH Stabilize sRNAs and Facilitate Regulation of Their mRNA Targets.

Authors:  Todd A Cameron; Nicholas R De Lay
Journal:  J Bacteriol       Date:  2016-11-18       Impact factor: 3.490

10.  Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach.

Authors:  Manuel J Rodríguez-Ortega; Inmaculada Luque; Carmen Tarradas; José A Bárcena
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.