Literature DB >> 12490439

The presence of signal peptide significantly affects transmembrane topology prediction.

Demelo M Lao1, Masafumi Arai, Masami Ikeda, Toshio Shimizu.   

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Year:  2002        PMID： 12490439     DOI： 10.1093/bioinformatics/18.12.1562

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  14 in total

1.  ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability.

Authors:  Masafumi Arai; Hironori Mitsuke; Masami Ikeda; Jun-Xiong Xia; Takashi Kikuchi; Masanobu Satake; Toshio Shimizu
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Proteome-wide functional classification and identification of prokaryotic transmembrane proteins by transmembrane topology similarity comparison.

Authors:  Masafumi Arai; Kosuke Okumura; Masanobu Satake; Toshio Shimizu
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

3.  An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity.

Authors:  Gang Zhao; Erwin London
Journal:  Protein Sci       Date:  2006-08       Impact factor: 6.725

4.  Type II opsins: evolutionary origin by internal domain duplication?

Authors:  Nicholas D Larusso; Brian E Ruttenberg; Ambuj K Singh; Todd H Oakley
Journal:  J Mol Evol       Date:  2008-04-08       Impact factor: 2.395

5.  Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis.

Authors:  Yogeswaran Lokanathan; Adura Mohd-Adnan; Kiew-Lian Wan; Sheila Nathan
Journal:  BMC Genomics       Date:  2010-01-29       Impact factor: 3.969

6.  Beta barrel trans-membrane proteins: Enhanced prediction using a Bayesian approach.

Authors:  Paul D Taylor; Christopher P Toseland; Teresa K Attwood; Darren R Flower
Journal:  Bioinformation       Date:  2006-10-07

7.  Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins.

Authors:  Pantelis G Bagos; Theodore D Liakopoulos; Stavros J Hamodrakas
Journal:  BMC Bioinformatics       Date:  2006-04-05       Impact factor: 3.169

8.  Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling.

Authors:  Timothy E Gookin; Junhyong Kim; Sarah M Assmann
Journal:  Genome Biol       Date:  2008-07-31       Impact factor: 13.583

Review 9.  Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.

Authors:  Juan Javier Díaz-Mejía; Mohan Babu; Andrew Emili
Journal:  FEMS Microbiol Rev       Date:  2008-11-27       Impact factor: 16.408

10.  Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

Authors:  Lukas Käll; Anders Krogh; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2007-05-05       Impact factor: 16.971
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