Literature DB >> 12490146

Comparison of DNA and RNA extraction methods for mummified tissues.

Nami Konomi1, Eve Lebwohl, David Zhang.   

Abstract

Nucleic acids extracted from mummified tissues are valuable materials for the study of ancient human beings. Significant difficulty in extracting nucleic acids from mummified tissues has been reported due to chemical modification and degradation. The goal of this study was to determine a method that is more efficient for DNA and RNA extraction from mummified tissues. Twelve mummy specimens were analyzed with 9 different nucleic acid extraction methods, including guanidium thiocyanate (GTC) and proteinase K/detergent based methods prepared in our laboratory or purchased. Glyceraldehyde 3-phosphate dehydrogenase DNA and beta-actin RNA were used as markers for the presence of adequate DNA and RNA, respectively, for PCR and RT-PCR amplification. Our results show that 5 M GTC is more efficient of releasing nucleic acids from mummified tissue than proteinase K/detergent, and phenol/chloroform extraction with an additional chloroform step is more efficient than phenol/chloroform along. We were able to isolate DNAs from all 12 specimens and RNAs from 8 of 12 specimens, and the nucleic acids were sufficient for PCR and RT-PCR analysis. We further tested hepatitis viruses including hepatitis B virus, hepatitis C virus, hepatitis G virus, and TT virus DNA, and fail to detect these viruses in all 12 specimens. Copyright 2002 Elsevier Science Ltd.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12490146     DOI: 10.1006/mcpr.2002.0441

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  6 in total

1.  Comparison of five methods for extraction of Legionella pneumophila from respiratory specimens.

Authors:  Deborah Wilson; Belinda Yen-Lieberman; Udo Reischl; Ilka Warshawsky; Gary W Procop
Journal:  J Clin Microbiol       Date:  2004-12       Impact factor: 5.948

2.  Evaluation of NucliSens easyMAG for automated nucleic acid extraction from various clinical specimens.

Authors:  K Loens; K Bergs; D Ursi; H Goossens; M Ieven
Journal:  J Clin Microbiol       Date:  2006-12-13       Impact factor: 5.948

3.  Detection and toxin typing of Clostridium perfringens in formalin-fixed, paraffin-embedded tissue samples by PCR.

Authors:  Josephine Wu; Wandi Zhang; Boxun Xie; Maoxin Wu; Xiaodi Tong; Jayant Kalpoe; David Zhang
Journal:  J Clin Microbiol       Date:  2008-12-24       Impact factor: 5.948

4.  Rapid, single-tube method for quantitative preparation and analysis of RNA and DNA in samples as small as one cell.

Authors:  Cristina Hartshorn; Aleksandra Anshelevich; Lawrence J Wangh
Journal:  BMC Biotechnol       Date:  2005-01-13       Impact factor: 2.563

5.  The paradox of HBV evolution as revealed from a 16th century mummy.

Authors:  Zoe Patterson Ross; Jennifer Klunk; Gino Fornaciari; Valentina Giuffra; Sebastian Duchêne; Ana T Duggan; Debi Poinar; Mark W Douglas; John-Sebastian Eden; Edward C Holmes; Hendrik N Poinar
Journal:  PLoS Pathog       Date:  2018-01-04       Impact factor: 6.823

6.  Effects of formalin fixation, paraffin embedding, and time of storage on DNA preservation in brain tissue: a BrainNet Europe study.

Authors:  Isidre Ferrer; Judith Armstrong; Sabina Capellari; Piero Parchi; Thomas Arzberger; Jeanne Bell; Herbert Budka; Thomas Ströbel; Giorgio Giaccone; Giacomina Rossi; Nenad Bogdanovic; Peter Fakai; Andrea Schmitt; Peter Riederers; Safa Al-Sarraj; Rivka Ravid; Hans Kretzschmar
Journal:  Brain Pathol       Date:  2007-04-23       Impact factor: 6.508

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.