Literature DB >> 12488024

The effect of force on thermodynamics and kinetics of single molecule reactions.

Ignacio Tinoco1, Carlos Bustamante.   

Abstract

The usual variables chemists use to affect a chemical reaction are temperature and pressure. We consider here an additional variable: force, F. By attaching a molecule to the tip of a cantilever of an atomic force microscope, or to a bead in a laser light trap, we can control the force on a single molecule. This mechanical force can drive a reaction to completion, or stabilize the reactants. Force changes the thermodynamic stability of a molecule; it can thus increase or decrease the free energy change for the reaction. Force can also speed or slow rates of reactions; it changes the free energy of activation of the reaction. Copyright 2002 Elsevier Science B.V.

Mesh:

Year:  2002        PMID: 12488024     DOI: 10.1016/s0301-4622(02)00177-1

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  54 in total

Review 1.  Force as a useful variable in reactions: unfolding RNA.

Authors:  Ignacio Tinoco
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Changes in single K channel behavior induced by a lipid phase transition.

Authors:  Andrea Alessandrini; Paolo Facci
Journal:  Commun Integr Biol       Date:  2011-05-01

Review 3.  The effect of force on thermodynamics and kinetics: unfolding single RNA molecules.

Authors:  I Tinoco; D Collin; P T X Li
Journal:  Biochem Soc Trans       Date:  2004-11       Impact factor: 5.407

4.  Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.

Authors:  Sarah A Harris; Zara A Sands; Charles A Laughton
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

5.  Thermodynamic and kinetic aspects of RNA pulling experiments.

Authors:  M Manosas; F Ritort
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

6.  A simple theoretical model explains dynein's response to load.

Authors:  Yi Qin Gao
Journal:  Biophys J       Date:  2005-11-11       Impact factor: 4.033

7.  Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods.

Authors:  Pan T X Li; Delphine Collin; Steven B Smith; Carlos Bustamante; Ignacio Tinoco
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

8.  Temperature control methods in a laser tweezers system.

Authors:  Hanbin Mao; J Ricardo Arias-Gonzalez; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

9.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

10.  Probing Interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy.

Authors:  Alexey V Krasnoslobodtsev; Luda S Shlyakhtenko; Yuri L Lyubchenko
Journal:  J Mol Biol       Date:  2006-10-17       Impact factor: 5.469

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