Literature DB >> 12466110

Effect of fixatives and tissue processing on the content and integrity of nucleic acids.

Mythily Srinivasan1, Daniel Sedmak, Scott Jewell.   

Abstract

Clinical and molecular medicines are undergoing a revolution based on the accelerated advances in biotechnology such as DNA microarrays and proteomics. Answers to fundamental questions such as how does the DNA sequence differ between individuals and what makes one individual more prone for a certain disease are eagerly being sought in this postgenomic era. Several government and nonprofit organizations provide the researchers access to human tissues for molecular studies. The tissues procured by the different organizations may differ with respect to fixation and processing parameters that may affect significantly the molecular profile of the tissues. It is imperative that a prospective investigator be aware of the potential contributing factors before designing a project. The purpose of this review is to provide an overview of the methods of human tissue acquisition, fixation, and preservation. In addition, the parameters of procurement and fixation that affect the quality of the tissues at the molecular level are discussed.

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Year:  2002        PMID: 12466110      PMCID: PMC1850907          DOI: 10.1016/S0002-9440(10)64472-0

Source DB:  PubMed          Journal:  Am J Pathol        ISSN: 0002-9440            Impact factor:   4.307


  72 in total

1.  The role of DNase and EDTA on DNA degradation in formaldehyde fixed tissues.

Authors:  N Yagi; K Satonaka; M Horio; H Shimogaki; Y Tokuda; S Maeda
Journal:  Biotech Histochem       Date:  1996-05       Impact factor: 1.718

Review 2.  Estimating mitotic activity in tumours.

Authors:  S S Cross; R D Start
Journal:  Histopathology       Date:  1996-11       Impact factor: 5.087

3.  Comparison of formalin, ethanol, and Histochoice fixation on the PCR amplification from paraffin-embedded breast cancer tissue.

Authors:  C Giannella; F A Zito; F Colonna; A Paradiso; F Marzullo; M Alaibac; F Schittulli
Journal:  Eur J Clin Chem Clin Biochem       Date:  1997-08

Review 4.  Application of microwave fixation techniques in pathology to neuroscience studies: a review.

Authors:  G R Login; A M Dvorak
Journal:  J Neurosci Methods       Date:  1994-12       Impact factor: 2.390

5.  Use of human tissue blocks for research.

Authors:  V A LiVolsi
Journal:  Am J Clin Pathol       Date:  1996-03       Impact factor: 2.493

6.  PCR amplification of DNA from archival specimens. A methodological approach.

Authors:  J Pavelić; K Gall-Troselj; M H Bosnar; M M Kardum; K Pavelić
Journal:  Neoplasma       Date:  1996       Impact factor: 2.575

7.  Modified formalin and methanol fixation methods for molecular biological and morphological analyses.

Authors:  M Noguchi; S Furuya; T Takeuchi; S Hirohashi
Journal:  Pathol Int       Date:  1997-10       Impact factor: 2.534

8.  Tissue pH as an indicator of mRNA preservation in human post-mortem brain.

Authors:  A E Kingsbury; O J Foster; A P Nisbet; N Cairns; L Bray; D J Eve; A J Lees; C D Marsden
Journal:  Brain Res Mol Brain Res       Date:  1995-02

9.  Detection of specific mRNAs in routinely processed dermatopathology specimens.

Authors:  L Tyrrell; J Elias; J Longley
Journal:  Am J Dermatopathol       Date:  1995-10       Impact factor: 1.533

Review 10.  Effects of fixative and fixation time on the extraction and polymerase chain reaction amplification of RNA from paraffin-embedded tissue. Comparison of two housekeeping gene mRNA controls.

Authors:  R D Foss; N Guha-Thakurta; R M Conran; P Gutman
Journal:  Diagn Mol Pathol       Date:  1994-09
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  376 in total

Review 1.  Clinical implementation of comprehensive strategies to characterize cancer genomes: opportunities and challenges.

Authors:  Laura E MacConaill; Paul Van Hummelen; Matthew Meyerson; William C Hahn
Journal:  Cancer Discov       Date:  2011-09       Impact factor: 39.397

2.  Effect of buffered formalin on amplification of DNA from paraffin wax embedded small biopsies using real-time PCR.

Authors:  V Zsikla; M Baumann; G Cathomas
Journal:  J Clin Pathol       Date:  2004-06       Impact factor: 3.411

3.  Detection of genetic variation in KCNQ1 gene by high-resolution melting analysis in a prospective-based series of postmortem negative sudden death: comparison of results obtained in fresh frozen and formalin-fixed paraffin-embedded tissues.

Authors:  Audrey Farrugia; Christine Keyser; Bertrand Ludes
Journal:  Int J Legal Med       Date:  2012-03-09       Impact factor: 2.686

4.  Immunoguided laser assisted microdissection techniques for DNA methylation analysis of archival tissue specimens.

Authors:  Franziska C Eberle; Jeffrey C Hanson; J Keith Killian; Lai Wei; Kris Ylaya; Stephen M Hewitt; Elaine S Jaffe; Michael R Emmert-Buck; Jaime Rodriguez-Canales
Journal:  J Mol Diagn       Date:  2010-04-22       Impact factor: 5.568

Review 5.  Molecular pathology and patient care.

Authors:  John D Pfeifer
Journal:  Mo Med       Date:  2010 Mar-Apr

6.  An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets.

Authors:  Tim B Dyrby; William F C Baaré; Daniel C Alexander; Jacob Jelsing; Ellen Garde; Lise V Søgaard
Journal:  Hum Brain Mapp       Date:  2011-04       Impact factor: 5.038

7.  Procurement of Human Tissues for Research Banking in the Surgical Pathology Laboratory: Prioritization Practices at Washington University Medical Center.

Authors:  Sandra A McDonald; Rebecca D Chernock; Tracey A Leach; Ajaz A Kahn; James H Yip; Joan Rossi; John D Pfeifer
Journal:  Biopreserv Biobank       Date:  2011-09       Impact factor: 2.300

8.  Interlaboratory variability of MIB1 staining in well-differentiated pancreatic neuroendocrine tumors.

Authors:  Annika Blank; Laura Wehweck; Ilaria Marinoni; Laura Amanda Boos; Frank Bergmann; Anja Maria Schmitt; Aurel Perren
Journal:  Virchows Arch       Date:  2015-09-17       Impact factor: 4.064

Review 9.  Beyond chemotherapy: targeted therapies in ovarian cancer.

Authors:  Timothy A Yap; Craig P Carden; Stan B Kaye
Journal:  Nat Rev Cancer       Date:  2009-03       Impact factor: 60.716

Review 10.  [PCR-based diagnosis of mucormycosis in tissue samples].

Authors:  R Bialek; U E Zelck
Journal:  Pathologe       Date:  2013-11       Impact factor: 1.011

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