Literature DB >> 12464322

New approaches to high-throughput phasing.

Zbigniew Dauter1.   

Abstract

Recent progress in macromolecular phasing, in part stimulated by the high-throughput structural biology initiatives, has made this crucial stage of the elucidation of crystal structures easier and more automatic. A quick soak in various salts leads to the rapid incorporation of the anomalously scattering ions, suitable for phasing by MAD (multiwavelength anomalous dispersion), SAD (single-wavelength anomalous dispersion) or MIR (multiple isomorphous replacement) methods. The availability of stable synchrotron beam lines equipped with elaborate hardware control and sophisticated data processing programs makes it possible to collect very accurate diffraction data and to solve structures from the very weak anomalous signal of such atoms as sulfur or phosphorus, inherently present in macromolecules. The current progress in phasing, coupled with the parallel advances in protein crystallization, diffraction data collection and so on, suggests that, in the near future, the process of macromolecular crystal structure elucidation may become fully automatic.

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Year:  2002        PMID: 12464322     DOI: 10.1016/s0959-440x(02)00372-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

2.  Crystallization and initial X-ray diffraction study of the three PASTA domains of the Ser/Thr kinase Stk1 from the human pathogen Staphylococcus aureus.

Authors:  Patricia Paracuellos; Allison Ballandras; Xavier Robert; Alain J Cozzone; Bertrand Duclos; Patrice Gouet
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-30

Review 3.  Can the propensity of protein crystallization be increased by using systematic screening with metals?

Authors:  Raghurama P Hegde; Gowribidanur C Pavithra; Debayan Dey; Steven C Almo; S Ramakumar; Udupi A Ramagopal
Journal:  Protein Sci       Date:  2017-06-29       Impact factor: 6.725

4.  Crystal structure of the catalytic domain of Drosophila beta1,4-Galactosyltransferase-7.

Authors:  Boopathy Ramakrishnan; Pradman K Qasba
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

5.  The use of Co2+ for crystallization and structure determination, using a conventional monochromatic X-ray source, of flax rust avirulence protein.

Authors:  Gregor Guncar; Ching-I A Wang; Jade K Forwood; Trazel Teh; Ann-Maree Catanzariti; Jeffrey G Ellis; Peter N Dodds; Bostjan Kobe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-02-23

6.  High-resolution structure prediction and the crystallographic phase problem.

Authors:  Bin Qian; Srivatsan Raman; Rhiju Das; Philip Bradley; Airlie J McCoy; Randy J Read; David Baker
Journal:  Nature       Date:  2007-10-14       Impact factor: 49.962

7.  From electron crystallography of 2D crystals to MicroED of 3D crystals.

Authors:  Michael W Martynowycz; Tamir Gonen
Journal:  Curr Opin Colloid Interface Sci       Date:  2018-01-31       Impact factor: 6.448

Review 8.  Protein Crystallography in Vaccine Research and Development.

Authors:  Enrico Malito; Andrea Carfi; Matthew J Bottomley
Journal:  Int J Mol Sci       Date:  2015-06-09       Impact factor: 5.923

9.  Facilitating best practices in collecting anomalous scattering data for de novo structure solution at the ESRF Structural Biology Beamlines.

Authors:  Daniele de Sanctis; Marcus Oscarsson; Alexander Popov; Olof Svensson; Gordon Leonard
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

Review 10.  Applications of contact predictions to structural biology.

Authors:  Felix Simkovic; Sergey Ovchinnikov; David Baker; Daniel J Rigden
Journal:  IUCrJ       Date:  2017-04-18       Impact factor: 4.769

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