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Literature DB >> 12461644

Sequence variations in the primer binding regions of the highly polymorphic STR system SE33.

Sandra Hering¹, Jeanett Edelmann, Jan Dressler.

Abstract

Five cases were found with sequence variation in the primer binding region of the highly polymorphic STR system SE33 used in the German genetic database. This variation can produce homozygote mistyping because of failed primer binding. We calculated a variation rate of 0.0022 (0.0006-0.0056) that could lead to complications in database matching. To avoid errors in individual genetic characterisation for SE33 as described here, it is suggested that two different primer pairs should be used.

Mesh：

Substances：
DNA Primers

Year: 2002 PMID： 12461644 DOI： 10.1007/s00414-002-0306-y

Source DB: PubMed Journal: Int J Legal Med ISSN： 0937-9827 Impact factor: 2.686

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Cited

8 in total

1. A very long ACTBP2 (SE33) allele.

Authors: R Klein; G Braunschweiger; A Junge; P Wiegand
Journal: Int J Legal Med Date: 2003-05-29 Impact factor: 2.686

2. DXS10011: studies on structure, allele distribution in three populations and genetic linkage to further q-telomeric chromosome X markers.

Authors: Sandra Hering; Nicola Brundirs; Eberhard Kuhlisch; Jeanett Edelmann; Ines Plate; Mark Benecke; Pham Hung Van; Matthias Michael; Reinhard Szibor
Journal: Int J Legal Med Date: 2004-07-10 Impact factor: 2.686

3. Development of the AmpFISTR SEfiler PCR amplification kit: a new multiplex containing the highly discriminating ACTBP2 (SE33) locus.

Authors: Sulekha Rao Coticone; Nicola Oldroyd; Heidi Philips; Paul Foxall
Journal: Int J Legal Med Date: 2004-05-15 Impact factor: 2.686

4. Allelic drop-out in the STR system ACTBP2 (SE33) as a result of mutations in the primer binding region.

Authors: Marielle Heinrich; Miriam Müller; Steven Rand; Bernd Brinkmann; Carsten Hohoff
Journal: Int J Legal Med Date: 2004-08-20 Impact factor: 2.686

5. Multistep microsatellite mutation in the maternally transmitted locus D13S317: a case of maternal allele mismatch in the child.

Authors: Devinder Singh Negi; Mahfooz Alam; S Annapurna Bhavani; Javaregowda Nagaraju
Journal: Int J Legal Med Date: 2006-03-03 Impact factor: 2.686

Sequence variations in the primer binding regions of the highly polymorphic STR system SE33.

1. A very long ACTBP2 (SE33) allele.

2. DXS10011: studies on structure, allele distribution in three populations and genetic linkage to further q-telomeric chromosome X markers.

3. Development of the AmpFISTR SEfiler PCR amplification kit: a new multiplex containing the highly discriminating ACTBP2 (SE33) locus.

4. Allelic drop-out in the STR system ACTBP2 (SE33) as a result of mutations in the primer binding region.

5. Multistep microsatellite mutation in the maternally transmitted locus D13S317: a case of maternal allele mismatch in the child.

6. Characterization of two unusual allele variants at the STR locus ACTBP2 (SE33).

7. Identification and sequence analysis of discordant phenotypes between AmpFlSTR SGM Plus and PowerPlex 16.

8. STR-typing of ancient skeletal remains: which multiplex-PCR kit is the best?