Literature DB >> 12460634

Assessing the consistency of a biomedical terminology through lexical knowledge.

Olivier Bodenreider1, Anita Burgun, Thomas C Rindflesch.   

Abstract

OBJECTIVE: We investigate the use of adjectival modification as a way of assessing the systematic use of linguistic phenomena to represent similar lexical or semantic features in the constituent terms of a vocabulary.
METHODS: Terms consisting of one or more adjectival modifiers followed by a head noun are selected from disease and procedure terms in SNOMED. Frequently co-occurring adjectival modifiers are systematically combined with the contexts (i.e., terms minus modifier) of each modifier. The existence of these combinations is checked in both SNOMED and the entire UMLS Metathesaurus; the term corresponding to the context alone is similarly checked. Relationships among terms sharing a context and between each of these terms and their context are studied.
RESULTS: Four pairs of modifiers were studied: (acute, chronic), (unilateral, bilateral), (primary, secondary), and (acquired, congenital). The numbers of contexts studied for each pair ranged from 73 to 974. The percentage of contexts associated with both modifiers ranged from 5 to 50% in SNOMED and from 10 to 60% in UMLS. The presence of the context term varied from 31 to 64% in SNOMED and from 43 to 79% in UMLS. Finally, 172 occurrences (9%) of synonymy between a modified term and the context term were found in SNOMED. One hundred and forty-five such occurrences (8%) were found in the entire Metathesaurus.

Mesh:

Year:  2002        PMID: 12460634     DOI: 10.1016/s1386-5056(02)00051-5

Source DB:  PubMed          Journal:  Int J Med Inform        ISSN: 1386-5056            Impact factor:   4.046


  14 in total

1.  Auditing consistency and usefulness of LOINC use among three large institutions - using version spaces for grouping LOINC codes.

Authors:  M C Lin; D J Vreeman; Clement J McDonald; S M Huff
Journal:  J Biomed Inform       Date:  2012-01-28       Impact factor: 6.317

Review 2.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

3.  Identifying mismatches in alignments of large anatomical ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.

Authors:  Fleur Mougin; Olivier Bodenreider; Anita Burgun
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

5.  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Junchuan Xu; Hua Min; James T Case; Zhi Wei
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

6.  Auditing the multiply-related concepts within the UMLS.

Authors:  Fleur Mougin; Natalia Grabar
Journal:  J Am Med Inform Assoc       Date:  2014-01-24       Impact factor: 4.497

7.  COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments.

Authors:  Mengmeng Sun; Wei Zhu; Shiqiang Tao; Licong Cui; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

8.  Medication information extraction with linguistic pattern matching and semantic rules.

Authors:  Irena Spasic; Farzaneh Sarafraz; John A Keane; Goran Nenadic
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

9.  An analysis of FMA using structural self-bisimilarity.

Authors:  Lingyun Luo; José L V Mejino; Guo-Qiang Zhang
Journal:  J Biomed Inform       Date:  2013-04-02       Impact factor: 6.317

10.  Dissecting the Ambiguity of FMA Concept Names Using Taxonomy and Partonomy Structural Information.

Authors:  Lingyun Luo; Rong Xu; Guo-Qiang Zhang
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2013-03-18
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.