Literature DB >> 12460570

On the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase.

Victor Kulik1, Michael Weyand, Ralf Seidel, Dimitri Niks, Demet Arac, Michael F Dunn, Ilme Schlichting.   

Abstract

The catalytic activity and substrate channeling of the pyridoxal 5'-phosphate-dependent tryptophan synthase alpha(2)beta(2) complex is regulated by allosteric interactions that modulate the switching of the enzyme between open, low activity and closed, high activity states during the catalytic cycle. The highly conserved alphaThr183 residue is part of loop alphaL6 and is located next to the alpha-active site and forms part of the alpha-beta subunit interface. The role of the interactions of alphaThr183 in alpha-site catalysis and allosteric regulation was investigated by analyzing the kinetics and crystal structures of the isosteric mutant alphaThr183Val. The mutant displays strongly impaired allosteric alpha-beta communication, and the catalytic activity of the alpha-reaction is reduced one hundred fold, whereas the beta-activity is not affected. The structural work establishes that the basis for the missing inter-subunit signaling is the lack of loop alphaL6 closure even in the presence of the alpha-subunit ligands, 3-indolyl-D-glycerol 3'-phosphate, or 3-indolylpropanol 3'-phosphate. The structural basis for the reduced alpha-activity has its origins in the missing hydrogen bond between alphaThr183 and the catalytic residue, alphaAsp60.

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Year:  2002        PMID: 12460570     DOI: 10.1016/s0022-2836(02)01109-9

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  18 in total

Review 1.  Allosteric regulation of substrate channeling and catalysis in the tryptophan synthase bienzyme complex.

Authors:  Michael F Dunn
Journal:  Arch Biochem Biophys       Date:  2012-02-02       Impact factor: 4.013

Review 2.  Tryptophan synthase: a mine for enzymologists.

Authors:  Samanta Raboni; Stefano Bettati; Andrea Mozzarelli
Journal:  Cell Mol Life Sci       Date:  2009-04-22       Impact factor: 9.261

3.  Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

Authors:  Dimitri Niks; Eduardo Hilario; Adam Dierkers; Huu Ngo; Dan Borchardt; Thomas J Neubauer; Li Fan; Leonard J Mueller; Michael F Dunn
Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

4.  Tryptophan synthase: structure and function of the monovalent cation site.

Authors:  Adam T Dierkers; Dimitri Niks; Ilme Schlichting; Michael F Dunn
Journal:  Biochemistry       Date:  2009-11-24       Impact factor: 3.162

5.  Severing of a hydrogen bond disrupts amino acid networks in the catalytically active state of the alpha subunit of tryptophan synthase.

Authors:  Jennifer M Axe; Kathleen F O'Rourke; Nicole E Kerstetter; Eric M Yezdimer; Yan M Chan; Alexander Chasin; David D Boehr
Journal:  Protein Sci       Date:  2014-12-11       Impact factor: 6.725

6.  A molecular characterization of spontaneous frameshift mutagenesis within the trpA gene of Escherichia coli.

Authors:  Aaron Hardin; Christopher F Villalta; Michael Doan; Mouna Jabri; Valliammal Chockalingham; Steven J White; Robert G Fowler
Journal:  DNA Repair (Amst)       Date:  2006-11-02

7.  Sensor domain of histidine kinase KinB of Pseudomonas: a helix-swapped dimer.

Authors:  Kemin Tan; Gekleng Chhor; T Andrew Binkowski; Robert P Jedrzejczak; Magdalena Makowska-Grzyska; Andrzej Joachimiak
Journal:  J Biol Chem       Date:  2014-02-26       Impact factor: 5.157

8.  Backbone assignments and conformational dynamics in the S. typhimurium tryptophan synthase α-subunit from solution-state NMR.

Authors:  Varun V Sakhrani; Eduardo Hilario; Bethany G Caulkins; Mary E Hatcher-Skeers; Li Fan; Michael F Dunn; Leonard J Mueller
Journal:  J Biomol NMR       Date:  2020-05-15       Impact factor: 2.835

9.  Distinct conformational dynamics and allosteric networks in alpha tryptophan synthase during active catalysis.

Authors:  Kathleen F O'Rourke; Rebecca N D'Amico; Debashish Sahu; David D Boehr
Journal:  Protein Sci       Date:  2020-12-19       Impact factor: 6.725

10.  Catalytically impaired TrpA subunit of tryptophan synthase from Chlamydia trachomatis is an allosteric regulator of TrpB.

Authors:  Karolina Michalska; Samantha Wellington; Natalia Maltseva; Robert Jedrzejczak; Nelly Selem-Mojica; L Rodrigo Rosas-Becerra; Francisco Barona-Gómez; Deborah T Hung; Andrzej Joachimiak
Journal:  Protein Sci       Date:  2021-06-16       Impact factor: 6.725

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