Literature DB >> 12456780

Strategies for PCR based detection of Burkholderia pseudomallei DNA in paraffin wax embedded tissues.

R M Hagen1, Y P Gauthier, L D Sprague, D R Vidal, G Zysk, E-J Finke, H Neubauer.   

Abstract

Recently, several cases of melioidosis imported to Europe have been reported. The diagnosis of the acute or chronic infection remains challenging. This report describes an optimised protocol for fast and reliable DNA preparation for use in two different polymerase chain reaction (PCR) assays, namely: (1) a seminested PCR assay targeting a genus specific sequence of the ribosomal protein subunit 21 (rpsU) gene and (2) a nested PCR assay targeting the gene encoding the filament forming flagellin (fliC). Various strains of Burkholderia spp, strains of closely related genera, and spleen tissue samples of experimentally infected mice were investigated. The combination of PCR and sequencing of the amplicons resulted in high sensitivity and specificity. These procedures may allow rapid, sensitive, and reliable detection of B pseudomallei DNA in routinely formalin fixed and paraffin wax embedded samples, thus providing a safe diagnostic tool and avoiding the cultivation of a risk group 3 agent. In addition, this method could be useful for retrospective histopathological investigations.

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Year:  2002        PMID: 12456780      PMCID: PMC1187279          DOI: 10.1136/mp.55.6.398

Source DB:  PubMed          Journal:  Mol Pathol        ISSN: 1366-8714


  10 in total

1.  The many facets of melioidosis.

Authors:  T Dharakul; S Songsivilai
Journal:  Trends Microbiol       Date:  1999-04       Impact factor: 17.079

2.  Imported melioidosis in England and Wales.

Authors:  D A Dance; M D Smith; H M Aucken; T L Pitt
Journal:  Lancet       Date:  1999-01-16       Impact factor: 79.321

3.  Identification of Pseudomonas pseudomallei in clinical practice: use of simple screening tests and API 20NE.

Authors:  D A Dance; V Wuthiekanun; P Naigowit; N J White
Journal:  J Clin Pathol       Date:  1989-06       Impact factor: 3.411

Review 4.  A review on melioidosis with special respect on molecular and immunological diagnostic techniques.

Authors:  G Zysk; W D Splettstösser; H Neubauer
Journal:  Clin Lab       Date:  2000       Impact factor: 1.138

5.  A possible pitfall in the identification of Burkholderia mallei using molecular identification systems based on the sequence of the flagellin fliC gene.

Authors:  Lisa D Sprague; Gregor Zysk; Ralf M Hagen; Hermann Meyer; Jill Ellis; Narisara Anuntagool; Yves Gauthier; Heinrich Neubauer
Journal:  FEMS Immunol Med Microbiol       Date:  2002-11-15

6.  Analysis of DNA in fresh and fixed tissue by the polymerase chain reaction.

Authors:  B B Rogers; L C Alpert; E A Hine; G J Buffone
Journal:  Am J Pathol       Date:  1990-03       Impact factor: 4.307

7.  Potential misidentification of Burkholderia pseudomallei by API 20NE.

Authors:  T J Inglis; D Chiang; G S Lee; L Chor-Kiang
Journal:  Pathology       Date:  1998-02       Impact factor: 5.306

8.  Study on the pathophysiology of experimental Burkholderia pseudomallei infection in mice.

Authors:  Y P Gauthier; R M Hagen; G S Brochier; H Neubauer; W D Splettstoesser; E J Finke; D R Vidal
Journal:  FEMS Immunol Med Microbiol       Date:  2001-02

9.  Mutagenesis of Burkholderia pseudomallei with Tn5-OT182: isolation of motility mutants and molecular characterization of the flagellin structural gene.

Authors:  D DeShazer; P J Brett; R Carlyon; D E Woods
Journal:  J Bacteriol       Date:  1997-04       Impact factor: 3.490

10.  Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov.

Authors:  E Yabuuchi; Y Kosako; H Oyaizu; I Yano; H Hotta; Y Hashimoto; T Ezaki; M Arakawa
Journal:  Microbiol Immunol       Date:  1992       Impact factor: 1.955

  10 in total
  12 in total

1.  Identification of Burkholderia pseudomallei and related bacteria by multiple-locus sequence typing-derived PCR and real-time PCR.

Authors:  Pierre Wattiau; Mieke Van Hessche; Heinrich Neubauer; Reena Zachariah; Ulrich Wernery; Hein Imberechts
Journal:  J Clin Microbiol       Date:  2007-01-24       Impact factor: 5.948

2.  Colitis caused by Entamoeba histolytica identified by real-time-PCR and fluorescence in situ hybridization from formalin-fixed, paraffin-embedded tissue.

Authors:  Andreas Müller; Hagen Frickmann; Egbert Tannich; Sven Poppert; Ralf Matthias Hagen
Journal:  Eur J Microbiol Immunol (Bp)       Date:  2022-09-22

3.  DISCRIMINATION OF Burkholderia mallei/pseudomallei FROM Burkholderia thailandensis BY SEQUENCE COMPARISON OF A FRAGMENT OF THE RIBOSOMAL PROTEIN S21 (RPSU) GENE.

Authors:  H Frickmann; N Chantratita; Y P Gauthier; H Neubauer; R M Hagen
Journal:  Eur J Microbiol Immunol (Bp)       Date:  2012-06-13

4.  Use of 16S rRNA gene sequencing for rapid identification and differentiation of Burkholderia pseudomallei and B. mallei.

Authors:  Jay E Gee; Claudio T Sacchi; Mindy B Glass; Barun K De; Robbin S Weyant; Paul N Levett; Anne M Whitney; Alex R Hoffmaster; Tanja Popovic
Journal:  J Clin Microbiol       Date:  2003-10       Impact factor: 5.948

5.  rpsU-based discrimination within the genus Burkholderia.

Authors:  H Frickmann; H Neubauer; U Loderstaedt; H Derschum; R M Hagen
Journal:  Eur J Microbiol Immunol (Bp)       Date:  2014-05-21

6.  Application of polymerase chain reaction to detect burkholderia pseudomallei and Brucella species in buffy coat from patients with febrile illness among rural and peri-urban population.

Authors:  Balaji Nandagopal; Sathish Sankar; Karthikeyan Lingesan; Kc Appu; Gopalan Sridharan; Anilkumar Gopinathan
Journal:  J Glob Infect Dis       Date:  2012-01

7.  Detection of tropical fungi in formalin-fixed, paraffin-embedded tissue: still an indication for microscopy in times of sequence-based diagnosis?

Authors:  Hagen Frickmann; Ulrike Loderstaedt; Paul Racz; Klara Tenner-Racz; Petra Eggert; Alexandra Haeupler; Ralf Bialek; Ralf Matthias Hagen
Journal:  Biomed Res Int       Date:  2015-04-19       Impact factor: 3.411

8.  A Quadruplex Real-Time PCR Assay for the Rapid Detection and Differentiation of the Most Relevant Members of the B. pseudomallei Complex: B. mallei, B. pseudomallei, and B. thailandensis.

Authors:  Chinn-Woan Lowe; Benjamin A Satterfield; Daniel B Nelson; Joseph D Thiriot; Michael J Heder; Jordon K March; David S Drake; Cynthia S Lew; Annette J Bunnell; Emily S Moore; Kim L O'Neill; Richard A Robison
Journal:  PLoS One       Date:  2016-10-13       Impact factor: 3.240

9.  Antimicrobial resistance profile of Enterococcus spp isolated from food in Southern Brazil.

Authors:  Gustavo Pelicioli Riboldi; Jeverson Frazzon; Pedro Alves d'Azevedo; Ana Paula Guedes Frazzon
Journal:  Braz J Microbiol       Date:  2009-03-01       Impact factor: 2.476

10.  Correlation of rpsU Gene Sequence Clusters and Biochemical Properties, Gc-Ms Spectra and Resistance Profiles of Clinical Burkholderia Spp. Isolates.

Authors:  Maria Franziska Ostermann; Heinrich Neubauer; Hagen Frickmann; Ralf Matthias Hagen
Journal:  Eur J Microbiol Immunol (Bp)       Date:  2016-02-26
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