Literature DB >> 12454471

Parallel cloning, expression, purification and crystallization of human proteins for structural genomics.

Hai-tao Ding1, Hui Ren, Qiang Chen, Gang Fang, Lan-fen Li, Rui Li, Zhuo Wang, Xiao-yu Jia, Yu-he Liang, Mei-hao Hu, Yi Li, Jing-chu Luo, Xiao-cheng Gu, Xiao-dong Su, Ming Luo, Shan-yun Lu.   

Abstract

54 human genes were selected as test targets for parallel cloning, expression, purification and crystallization. Proteins from these genes were selected to have a molecular weight of between 14 and 50 kDa, not to have a high percentage of hydrophobic residues (i.e. more likely to be soluble) and to have no known crystal structures and were not known to be subunits of heterocomplexes. Four proteins containing transmembrane regions were selected for comparative tests. To date, 44 expression clones have been constructed with the Gateway cloning system (Invitrogen, The Netherlands). Of these, 35 clones were expressed as recombinant proteins in Escherichia coli strain BL21 (DE3)-pLysS, of which 12 were soluble and four have been purified to homogeneity. Crystallization conditions were screened for the purified proteins in 96-well plates under oil. After further refinement with the same device or by the hanging-drop method, crystals were grown, with needle, plate and prism shapes. A 2.12 A data set was collected for protein NCC27. The results provide insights into the high-throughput target selection, cloning, expression and crystallization of human genomic proteins.

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Year:  2002        PMID: 12454471     DOI: 10.1107/s0907444902016359

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  16 in total

1.  Structural genomics efforts at the Chinese Academy of Sciences and Peking University.

Authors:  W M Gong; H Y Liu; L W Niu; Y Y Shi; Y J Tang; M K Teng; J H Wu; D C Liang; D C Wang; J F Wang; J P Ding; H Y Hu; Q H Huang; Q H Zhang; S Y Lu; J L An; Y H Liang; X F Zheng; X C Gu; X D Su
Journal:  J Struct Funct Genomics       Date:  2003

2.  Expression screening, protein purification and NMR analysis of human protein domains for structural genomics.

Authors:  G E Folkers; B N M van Buuren; R Kaptein
Journal:  J Struct Funct Genomics       Date:  2004

3.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

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Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

4.  Multiple post-translational modifications affect heterologous protein synthesis.

Authors:  Alexander A Tokmakov; Atsushi Kurotani; Tetsuo Takagi; Mitsutoshi Toyama; Mikako Shirouzu; Yasuo Fukami; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2012-06-06       Impact factor: 5.157

5.  DNA shuffling as a tool for protein crystallization.

Authors:  Robert J Keenan; Daniel L Siehl; Rebecca Gorton; Linda A Castle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-10       Impact factor: 11.205

6.  Mining mammalian genomes for folding competent proteins using Tat-dependent genetic selection in Escherichia coli.

Authors:  Hyung-Kwon Lim; Thomas J Mansell; Stephen W Linderman; Adam C Fisher; Michael R Dyson; Matthew P DeLisa
Journal:  Protein Sci       Date:  2009-12       Impact factor: 6.725

7.  The crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus.

Authors:  Hui Ren; Liya Wang; Matthew Bennett; Yuhe Liang; Xiaofeng Zheng; Fei Lu; Lanfen Li; Jie Nan; Ming Luo; Staffan Eriksson; Chuanmao Zhang; Xiao-Dong Su
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-03       Impact factor: 11.205

8.  Restructuring of the dinucleotide-binding fold in an NADP(H) sensor protein.

Authors:  Xiaofeng Zheng; Xueyu Dai; Yanmei Zhao; Qiang Chen; Fei Lu; Deqiang Yao; Quan Yu; Xinping Liu; Chuanmao Zhang; Xiaocheng Gu; Ming Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-11       Impact factor: 11.205

9.  Protein preparation, crystallization and preliminary crystallographic studies of Bacillus subtilis glycinamide ribonucleotide transformylase.

Authors:  Yu-He Liang; Xiang-Yu Liu; Juan Wang; Lan-Fen Li
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-06-27

10.  Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N.

Authors:  Qin Zhao; Ronnie Frederick; Kory Seder; Sandy Thao; Hassan Sreenath; Francis Peterson; Brian F Volkman; John L Markley; Brian G Fox
Journal:  J Struct Funct Genomics       Date:  2004
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