Literature DB >> 12449398

Creating randomized amino acid libraries with the QuikChange Multi Site-Directed Mutagenesis Kit.

Holly H Hogrefe1, Janice Cline, Geri L Youngblood, Ronda M Allen.   

Abstract

The QuikChange Multi Site-Directed Mutagenesis Kit is a simple and efficient method for introducing point mutations at up to five sites simultaneously in plasmid DNA templates. Here we used the QuikChange Multi kit with degenerate (one codon) primers to introduce all possible amino acids at selected sites in the lacZ gene. In reactions employing two or three degenerate primers, diverse libraries (10(4)-10(5) mutants/reaction) are created consisting of random combinations of mutations at two or three different sites. This method provides a one-day procedure for performing site-directed saturation mutagenesis and, when coupled with a suitable screening assay, should greatly facilitate the process of evaluating alternative amino acid chain substitutions at key residues and evolving protein function.

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Year:  2002        PMID: 12449398     DOI: 10.2144/02335pf01

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  42 in total

1.  Directed evolution of an ultrastable carbonic anhydrase for highly efficient carbon capture from flue gas.

Authors:  Oscar Alvizo; Luan J Nguyen; Christopher K Savile; Jamie A Bresson; Satish L Lakhapatri; Earl O P Solis; Richard J Fox; James M Broering; Michael R Benoit; Sabrina A Zimmerman; Scott J Novick; Jack Liang; James J Lalonde
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  An efficient one-step site-directed and site-saturation mutagenesis protocol.

Authors:  Lei Zheng; Ulrich Baumann; Jean-Louis Reymond
Journal:  Nucleic Acids Res       Date:  2004-08-10       Impact factor: 16.971

3.  Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function.

Authors:  Thomas P Treynor; Christina L Vizcarra; Daniel Nedelcu; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-19       Impact factor: 11.205

4.  Efficient site-directed saturation mutagenesis using degenerate oligonucleotides.

Authors:  David L Steffens; John G K Williams
Journal:  J Biomol Tech       Date:  2007-07

5.  Improving enzyme activity of glucosamine-6-phosphate synthase by semi-rational design strategy and computer analysis.

Authors:  Piwu Li; Kang Li; Xu Li; Fei Zhao; Ruiming Wang; Junqing Wang
Journal:  Biotechnol Lett       Date:  2020-06-29       Impact factor: 2.461

6.  An improved dual-tube megaprimer approach for multi-site saturation mutagenesis.

Authors:  Wei Zhang; Bengt Mannervik
Journal:  World J Microbiol Biotechnol       Date:  2012-12-07       Impact factor: 3.312

7.  Efficient multi-site-directed mutagenesis directly from genomic template.

Authors:  Fengtao Luo; Xiaolan Du; Tujun Weng; Xuan Wen; Junlan Huang; Lin Chen
Journal:  J Biosci       Date:  2012-12       Impact factor: 1.826

8.  Role of BC loop residues in structure, function and antigenicity of the West Nile virus envelope protein receptor-binding domain III.

Authors:  Shuliu Zhang; Evgeniy I Bovshik; Rodrigo Maillard; Gregory D Gromowski; David E Volk; Catherine H Schein; Claire Y-H Huang; David G Gorenstein; James C Lee; Alan D T Barrett; David W C Beasley
Journal:  Virology       Date:  2010-05-06       Impact factor: 3.616

9.  High-efficiency scarless genetic modification in Escherichia coli by using lambda red recombination and I-SceI cleavage.

Authors:  Junjie Yang; Bingbing Sun; He Huang; Yu Jiang; Liuyang Diao; Biao Chen; Chongmao Xu; Xin Wang; Jinle Liu; Weihong Jiang; Sheng Yang
Journal:  Appl Environ Microbiol       Date:  2014-04-18       Impact factor: 4.792

10.  All-codon scanning identifies p53 cancer rescue mutations.

Authors:  Roberta Baronio; Samuel A Danziger; Linda V Hall; Kirsty Salmon; G Wesley Hatfield; Richard H Lathrop; Peter Kaiser
Journal:  Nucleic Acids Res       Date:  2010-06-25       Impact factor: 16.971

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