Literature DB >> 12444085

The role of hydrogen bonding via interfacial water molecules in antigen-antibody complexation. The HyHEL-10-HEL interaction.

Akiko Yokota1, Kouhei Tsumoto, Mitsunori Shiroishi, Hidemasa Kondo, Izumi Kumagai.   

Abstract

To study the role of hydrogen bonding via interfacial water molecules in protein-protein interactions, we examined the interaction between hen egg white lysozyme (HEL) and its HyHEL-10 variable domain fragment (Fv) antibody. We constructed three antibody mutants (l-Y50F, l-S91A, and l-S93A) and investigated the interactions between the mutant Fvs and HEL. Isothermal titration calorimetry indicated that the mutations significantly decreased the negative enthalpy change (8-25 kJ mol(-1)), despite some offset by a favorable entropy change. X-ray crystallography demonstrated that the complexes had nearly identical structures, including the positions of the interfacial water molecules. Taken together, the isothermal titration calorimetric and x-ray crystallographic results indicate that hydrogen bonding via interfacial water enthalpically contributes to the Fv-HEL interaction despite the partial offset because of entropy loss, suggesting that hydrogen bonding stiffens the antigen-antibody complex.

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Year:  2002        PMID: 12444085     DOI: 10.1074/jbc.M210182200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  18 in total

1.  A new clustering of antibody CDR loop conformations.

Authors:  Benjamin North; Andreas Lehmann; Roland L Dunbrack
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

2.  Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10.

Authors:  Takeshi Nakanishi; Kouhei Tsumoto; Akiko Yokota; Hidemasa Kondo; Izumi Kumagai
Journal:  Protein Sci       Date:  2008-02       Impact factor: 6.725

3.  Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme.

Authors:  Akiko Yokota; Kouhei Tsumoto; Mitsunori Shiroishi; Takeshi Nakanishi; Hidemasa Kondo; Izumi Kumagai
Journal:  J Biol Chem       Date:  2009-12-28       Impact factor: 5.157

4.  An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody.

Authors:  Shigeki Arai; Chie Shibazaki; Motoyasu Adachi; Eijiro Honjo; Taro Tamada; Yoshitake Maeda; Tomoyuki Tahara; Takashi Kato; Hiroshi Miyazaki; Michael Blaber; Ryota Kuroki
Journal:  Protein Sci       Date:  2016-07-25       Impact factor: 6.725

5.  Specific fluorine labeling of the HyHEL10 antibody affects antigen binding and dynamics.

Authors:  Mauro Acchione; Yi-Chien Lee; Morgan E DeSantis; Claudia A Lipschultz; Alexander Wlodawer; Mi Li; Aranganathan Shanmuganathan; Richard L Walter; Sandra Smith-Gill; Joseph J Barchi
Journal:  Biochemistry       Date:  2012-07-16       Impact factor: 3.162

6.  Structure and Dynamics of Stacking Interactions in an Antibody Binding Site.

Authors:  Ramkrishna Adhikary; Jörg Zimmermann; Robyn L Stanfield; Ian A Wilson; Wayne Yu; Masayuki Oda; Floyd E Romesberg
Journal:  Biochemistry       Date:  2019-06-19       Impact factor: 3.162

7.  Defining the complementarities between antibodies and haptens to refine our understanding and aid the prediction of a successful binding interaction.

Authors:  Mohammed M Al Qaraghuli; Soumya Palliyil; Gillian Broadbent; David C Cullen; Keith A Charlton; Andrew J Porter
Journal:  BMC Biotechnol       Date:  2015-10-24       Impact factor: 2.563

8.  Structural coupling between FKBP12 and buried water.

Authors:  Szilvia Szep; Sheldon Park; Eric T Boder; Gregory D Van Duyne; Jeffery G Saven
Journal:  Proteins       Date:  2009-02-15

9.  Association energetics of cross-reactive and specific antibodies.

Authors:  S Mohan; Katerina Kourentzi; Kari A Schick; Christian Uehara; Claudia A Lipschultz; Mauro Acchione; Morgan E Desantis; Sandra J Smith-Gill; Richard C Willson
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

10.  Anti-TNF Alpha Antibody Humira with pH-dependent Binding Characteristics: A constant-pH Molecular Dynamics, Gaussian Accelerated Molecular Dynamics, and In Vitro Study.

Authors:  Shih-Ting Hong; Yu-Cheng Su; Yu-Jen Wang; Tian-Lu Cheng; Yeng-Tseng Wang
Journal:  Biomolecules       Date:  2021-02-23
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