Literature DB >> 12429089

The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase.

Jacob P Keller1, Paul M Smith, Jordi Benach, Dinesh Christendat, George T deTitta, John F Hunt.   

Abstract

The CbiT and CbiE enzymes participate in the biosynthesis of vitamin B12. They are fused together in some organisms to form a protein called CobL, which catalyzes two methylations and one decarboxylation on a precorrin intermediate. Because CbiE has sequence homology to canonical precorrin methyltransferases, CbiT was hypothesized to catalyze the decarboxylation. We herein present the crystal structure of MT0146, the CbiT homolog from Methanobacterium thermoautotrophicum. The protein shows structural similarity to Rossmann-like S-adenosyl-methionine-dependent methyltransferases, and our 1.9 A cocrystal structure shows that it binds S-adenosyl-methionine in standard geometry near a binding pocket that could accommodate a precorrin substrate. Therefore, MT0146/CbiT probably functions as a precorrin methyltransferase and represents the first enzyme identified with this activity that does not have the canonical precorrin methyltransferase fold.

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Year:  2002        PMID: 12429089     DOI: 10.1016/s0969-2126(02)00876-6

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  13 in total

1.  A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase.

Authors:  Martine Roovers; Johan Wouters; Janusz M Bujnicki; Catherine Tricot; Victor Stalon; Henri Grosjean; Louis Droogmans
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

Review 2.  Many paths to methyltransfer: a chronicle of convergence.

Authors:  Heidi L Schubert; Robert M Blumenthal; Xiaodong Cheng
Journal:  Trends Biochem Sci       Date:  2003-06       Impact factor: 13.807

3.  Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module.

Authors:  Meredith A Skiba; Andrew P Sikkema; Nathan A Moss; Andrew N Lowell; Min Su; Rebecca M Sturgis; Lena Gerwick; William H Gerwick; David H Sherman; Janet L Smith
Journal:  ACS Chem Biol       Date:  2018-05-08       Impact factor: 5.100

4.  Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.

Authors:  Deepak Bandyopadhyay; Jun Huan; Jan Prins; Jack Snoeyink; Wei Wang; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2009-06-20       Impact factor: 3.686

Review 5.  Fine-tuning our knowledge of the anaerobic route to cobalamin (vitamin B12).

Authors:  Charles A Roessner; A Ian Scott
Journal:  J Bacteriol       Date:  2006-08-25       Impact factor: 3.490

6.  Cloning, purification and preliminary crystallographic analysis of cobalamin methyltransferases from Rhodobacter capsulatus.

Authors:  Arefeh Seyedarabi; Thomas Hutchison; Teng Teng To; Evelyne Deery; Amanda Brindley; Martin J Warren; Richard W Pickersgill
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-26

7.  MtrP, a putative methyltransferase in Corynebacteria, is required for optimal membrane transport of trehalose mycolates.

Authors:  Arek K Rainczuk; Stephan Klatt; Yoshiki Yamaryo-Botté; Rajini Brammananth; Malcolm J McConville; Ross L Coppel; Paul K Crellin
Journal:  J Biol Chem       Date:  2020-03-26       Impact factor: 5.157

8.  Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.

Authors:  Mitchell D Miller; L Aravind; Constantina Bakolitsa; Christopher L Rife; Dennis Carlton; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Hsiu Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Julie Feuerhelm; Joanna C Grant; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Piotr Kozbial; S Sri Krishna; Abhinav Kumar; David Marciano; Daniel McMullan; Andrew T Morse; Edward Nigoghossian; Linda Okach; Ron Reyes; Henry van den Bedem; Dana Weekes; Qingping Xu; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-06

9.  Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis.

Authors:  Balasundaram Padmanabhan; Shigeyuki Yokoyama; Yoshitaka Bessho
Journal:  BMC Struct Biol       Date:  2013-05-20

10.  Structure-guided comparative analysis of proteins: principles, tools, and applications for predicting function.

Authors:  Raja Mazumder; Sona Vasudevan
Journal:  PLoS Comput Biol       Date:  2008-09-26       Impact factor: 4.475

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