Literature DB >> 12424130

Poxvirus Orthologous Clusters (POCs).

Angelika Ehlers1, John Osborne, Stephanie Slack, Rachel L Roper, Chris Upton.   

Abstract

Poxvirus Orthologous Clusters (POCs) is a JAVA client-server application which accesses an updated database containing all complete poxvirus genomes; it automatically groups orthologous genes into families based on BLASTP scores for assessment by a human database curator. POCs has a user-friendly interface permitting complex SQL queries to retrieve interesting groups of DNA and protein sequences as well as gene families for subsequent interrogation by a variety of integrated tools: BLASTP, BLASTX, TBLASTN, Jalview (multiple alignment), Dotlet (Dotplot), Laj (local alignment), and NAP (nucleotide to amino acid alignment).

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Year:  2002        PMID： 12424130     DOI： 10.1093/bioinformatics/18.11.1544

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  34 in total

1.  Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome.

Authors:  Chris Upton; Stephanie Slack; Arwen L Hunter; Angelika Ehlers; Rachel L Roper
Journal:  J Virol       Date:  2003-07       Impact factor: 5.103

Review 2.  Viral serine/threonine protein kinases.

Authors:  Thary Jacob; Céline Van den Broeke; Herman W Favoreel
Journal:  J Virol       Date:  2010-11-17       Impact factor: 5.103

3.  Cell biological and functional characterization of the vaccinia virus F10 kinase: implications for the mechanism of virion morphogenesis.

Authors:  Almira Punjabi; Paula Traktman
Journal:  J Virol       Date:  2005-02       Impact factor: 5.103

4.  Sequence Searcher: A Java tool to perform regular expression and fuzzy searches of multiple DNA and protein sequences.

Authors:  Francesco Marass; Chris Upton
Journal:  BMC Res Notes       Date:  2009-01-30

5.  Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.

Authors:  Richard P Bishop; Clare Fleischauer; Etienne P de Villiers; Edward A Okoth; Marisa Arias; Carmina Gallardo; Chris Upton
Journal:  Virus Genes       Date:  2015-02-03       Impact factor: 2.332

6.  Human antibody responses to the polyclonal Dryvax vaccine for smallpox prevention can be distinguished from responses to the monoclonal replacement vaccine ACAM2000.

Authors:  Christine Pugh; Sarah Keasey; Lawrence Korman; Phillip R Pittman; Robert G Ulrich
Journal:  Clin Vaccine Immunol       Date:  2014-04-23

7.  Characterization of the vaccinia virus A35R protein and its role in virulence.

Authors:  Rachel L Roper
Journal:  J Virol       Date:  2006-01       Impact factor: 5.103

8.  Genomic analysis of the vaccinia virus strain variants found in Dryvax vaccine.

Authors:  Li Qin; Chris Upton; Bart Hazes; David H Evans
Journal:  J Virol       Date:  2011-10-05       Impact factor: 5.103

9.  New insights into the evolution of Entomopoxvirinae from the complete genome sequences of four entomopoxviruses infecting Adoxophyes honmai, Choristoneura biennis, Choristoneura rosaceana, and Mythimna separata.

Authors:  Julien Thézé; Jun Takatsuka; Zhen Li; Julie Gallais; Daniel Doucet; Basil Arif; Madoka Nakai; Elisabeth A Herniou
Journal:  J Virol       Date:  2013-05-15       Impact factor: 5.103

10.  Ectromelia virus BTB/kelch proteins, EVM150 and EVM167, interact with cullin-3-based ubiquitin ligases.

Authors:  Brianne A Wilton; Stephanie Campbell; Nicholas Van Buuren; Robyn Garneau; Manabu Furukawa; Yue Xiong; Michele Barry
Journal:  Virology       Date:  2008-01-24       Impact factor: 3.616
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