Literature DB >> 12416986

Isolation of a single activating allosteric interaction in phosphofructokinase from Escherichia coli.

Aron W Fenton1, Gregory D Reinhart.   

Abstract

Escherichia coli phosphofructokinase 1 (EcPFK) is a homotetramer with four active and four allosteric sites. Understanding of the structural basis of allosteric activation of EcPFK by MgADP is complicated by the multiplicity of binding sites. To isolate a single heterotropic allosteric interaction, hybrid tetramers were formed between wild-type and mutant EcPFK subunits in which the binding sites of the mutant subunits have decreased affinity for their respective ligands. The 1:3 (wild-type:mutant) hybrid that contained only one native active site and one native allosteric site was isolated. The affinity for the substrate fructose-6-phosphate (Fru-6-P) of a single wild-type active site is greatly decreased over that displayed by the wild-type tetramer due to the lack of homotropic activation. The free energy of activation by MgADP for this heterotropic interaction is -0.58 kcal/mol at 8.5 degrees C. This compares to -2.87 kcal/mol for a hybrid with no homotropic coupling but all four unique heterotropic interactions. Therefore, the isolated interaction contributes 20% of the total heterotropic coupling. By comparison, wild-type EcPFK exhibits a coupling free energy between Fru-6-P and MgADP of -1.56 kcal/mol under these conditions, indicating that the effects of MgADP are diminished by a homotropic activation equal to -1.3 kcal/mol. These data are not consistent with a concerted allosteric mechanism.

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Year:  2002        PMID: 12416986     DOI: 10.1021/bi026450g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Whole-protein alanine-scanning mutagenesis of allostery: A large percentage of a protein can contribute to mechanism.

Authors:  Qingling Tang; Aron W Fenton
Journal:  Hum Mutat       Date:  2017-06-16       Impact factor: 4.878

2.  Chokepoints in Mechanical Coupling Associated with Allosteric Proteins: The Pyruvate Kinase Example.

Authors:  Lewis E Johnson; Bojana Ginovska; Aron W Fenton; Simone Raugei
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

Review 3.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  The lid domain is important, but not essential, for catalysis of Escherichia coli pyruvate kinase.

Authors:  Elena Sugrue; David Coombes; David Wood; Tong Zhu; Katherine A Donovan; Renwick C J Dobson
Journal:  Eur Biophys J       Date:  2020-09-25       Impact factor: 1.733

5.  Identification of regions of rabbit muscle pyruvate kinase important for allosteric regulation by phenylalanine, detected by H/D exchange mass spectrometry.

Authors:  Charulata B Prasannan; Maria T Villar; Antonio Artigues; Aron W Fenton
Journal:  Biochemistry       Date:  2013-03-06       Impact factor: 3.162

6.  Exploring the limits of the usefulness of mutagenesis in studies of allosteric mechanisms.

Authors:  Qingling Tang; Aileen Y Alontaga; Todd Holyoak; Aron W Fenton
Journal:  Hum Mutat       Date:  2017-05-23       Impact factor: 4.878

7.  Disentangling the web of allosteric communication in a homotetramer: heterotropic inhibition in phosphofructokinase from Escherichia coli.

Authors:  Aron W Fenton; Gregory D Reinhart
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

Review 8.  Allostery: an illustrated definition for the 'second secret of life'.

Authors:  Aron W Fenton
Journal:  Trends Biochem Sci       Date:  2008-08-15       Impact factor: 13.807

9.  The pH dependence of the allosteric response of human liver pyruvate kinase to fructose-1,6-bisphosphate, ATP, and alanine.

Authors:  Aron W Fenton; Myra Hutchinson
Journal:  Arch Biochem Biophys       Date:  2009-01-20       Impact factor: 4.013

10.  Enhancing allosteric inhibition in Thermus thermophilus Phosphofructokinase.

Authors:  Maria S McGresham; Gregory D Reinhart
Journal:  Biochemistry       Date:  2015-01-14       Impact factor: 3.162

  10 in total

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