Literature DB >> 12411601

Ancient DNA and the population genetics of cave bears (Ursus spelaeus) through space and time.

Ludovic Orlando1, Dominique Bonjean, Herve Bocherens, Aurelie Thenot, Alain Argant, Marcel Otte, Catherine Hänni.   

Abstract

The cave bear spread from Western Europe to the Near East during the Riss glaciation (250 KYA) before becoming extinct approximately 12 KYA. During that period, the climatic conditions were highly dynamic, oscillating between glacial and temperate episodes. Such events have constrained the geographic repartition of species, the movements of populations and shaped their genetic diversity. We retrieved and analyzed ancient DNA from 21 samples from five European caves ranging from 40 to 130 KYA. Combined with available data, our data set accounts for a total of 41 sequences of cave bear, coming from 18 European caves. We distinguish four haplogroups at the level of the mitochondrial DNA control region. The large population size of cave bear could account for the maintenance of such polymorphism. Extensive gene flow seems to have connected European populations because two haplogroups cover wide geographic areas. Furthermore, the extensive sampling of the deposits of the Scladina cave located in Belgium allowed us to correlate changes in climatic conditions with the intrapopulational genetic diversity over 90 KY.

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Year:  2002        PMID: 12411601     DOI: 10.1093/oxfordjournals.molbev.a004016

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  14 in total

1.  Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas.

Authors:  Helena Fernández; Sandrine Hughes; Jean-Denis Vigne; Daniel Helmer; Greg Hodgins; Christian Miquel; Catherine Hänni; Gordon Luikart; Pierre Taberlet
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

2.  Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet.

Authors:  Céline Bon; Nicolas Caudy; Maud de Dieuleveult; Philippe Fosse; Michel Philippe; Frédéric Maksud; Eliane Beraud-Colomb; Eric Bouzaid; Rym Kefi; Christelle Laugier; Bernard Rousseau; Didier Casane; Johannes van der Plicht; Jean-Marc Elalouf
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-27       Impact factor: 11.205

3.  Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos).

Authors:  Cristina E Valdiosera; José Luis García-Garitagoitia; Nuria Garcia; Ignacio Doadrio; Mark G Thomas; Catherine Hänni; Juan-Luis Arsuaga; Ian Barnes; Michael Hofreiter; Ludovic Orlando; Anders Götherström
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-17       Impact factor: 11.205

4.  Morphological convergence in Hippidion and Equus (Amerhippus) South American equids elucidated by ancient DNA analysis.

Authors:  Ludovic Orlando; Véra Eisenmann; Frédéric Reynier; Paul Sondaar; Catherine Hänni
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

5.  Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA.

Authors:  Mathias Stiller; Michael Knapp; Udo Stenzel; Michael Hofreiter; Matthias Meyer
Journal:  Genome Res       Date:  2009-07-27       Impact factor: 9.043

6.  A dig into the past mitochondrial diversity of Corsican goats reveals the influence of secular herding practices.

Authors:  Sandrine Hughes; Helena Fernández; Thomas Cucchi; Marilyne Duffraisse; François Casabianca; Daniel Istria; François Pompanon; Jean-Denis Vigne; Catherine Hänni; Pierre Taberlet
Journal:  PLoS One       Date:  2012-01-27       Impact factor: 3.240

7.  Late Quaternary loss of genetic diversity in muskox (Ovibos).

Authors:  Ross D E MacPhee; Alexei N Tikhonov; Dick Mol; Alex D Greenwood
Journal:  BMC Evol Biol       Date:  2005-10-06       Impact factor: 3.260

8.  Using classical population genetics tools with heterochroneous data: time matters!

Authors:  Frantz Depaulis; Ludovic Orlando; Catherine Hänni
Journal:  PLoS One       Date:  2009-05-14       Impact factor: 3.240

9.  Sequences from first settlers reveal rapid evolution in Icelandic mtDNA pool.

Authors:  Agnar Helgason; Carles Lalueza-Fox; Shyamali Ghosh; Sigrún Sigurethardóttir; Maria Lourdes Sampietro; Elena Gigli; Adam Baker; Jaume Bertranpetit; Lilja Arnadóttir; Unnur Thornorsteinsdottir; Kári Stefánsson
Journal:  PLoS Genet       Date:  2009-01-16       Impact factor: 5.917

10.  Genetic response to climatic change: insights from ancient DNA and phylochronology.

Authors:  Elizabeth A Hadly; Uma Ramakrishnan; Yvonne L Chan; Marcel van Tuinen; Kim O'Keefe; Paula A Spaeth; Chris J Conroy
Journal:  PLoS Biol       Date:  2004-09-07       Impact factor: 8.029

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