Literature DB >> 12405862

Fluorescence of cis-1-amino-2-(3-indolyl)cyclohexane-1-carboxylic acid: a single tryptophan chi(1) rotamer model.

Bo Liu1, Reema K Thalji, Paul D Adams, Frank R Fronczek, Mark L McLaughlin, Mary D Barkley.   

Abstract

A constrained derivative, cis-1-amino-2-(3-indolyl)cyclohexane-1-carboxylic acid, cis-W3, was designed to test the rotamer model of tryptophan photophysics. The conformational constraint enforces a single chi(1) conformation, analogous to the chi(1) = 60 degrees rotamer of tryptophan. The side-chain torsion angles in the X-ray structure of cis-W3 were chi(1) = 58.5 degrees and chi(2) = -88.7 degrees. Molecular mechanics calculations suggested two chi(2) rotamers for cis-W3 in solution, -100 degrees and 80 degrees, analogous to the chi(2) = +/-90 degrees rotamers of tryptophan. The fluorescence decay of the cis-W3 zwitterion was biexponential with lifetimes of 3.1 and 0.3 ns at 25 degrees C. The relative amplitudes of the lifetime components match the chi(2) rotamer populations predicted by molecular mechanics. The longer lifetime represents the major chi(2) = -100 degrees rotamer. The shorter lifetime represents the minor chi(2) = 80 degrees rotamer having the ammonium group closer to C4 of the indole ring (labeled C5 in the cis-W3 X-ray structure). Intramolecular excited-state proton transfer occurs at indole C4 in the tryptophan zwitterion (Saito, I.; Sugiyama, H.; Yamamoto, A.; Muramatsu, S.; Matsuura,T. J. Am. Chem. Soc. 1984, 106, 4286-4287). Photochemical isotope exchange experiments showed that H-D exchange occurs exclusively at C5 in the cis-W3 zwitterion, consistent with the presence of the chi(2) = 80 degrees rotamer in solution. The rates of two nonradiative processes, excited-state proton and electron transfer, were measured for individual chi(2) rotamers. The excited-state proton-transfer rate was determined from H-D exchange and fluorescence lifetime data. The excited-state electron-transfer rate was determined from the temperature dependence of the fluorescence lifetime. The major quenching process in the -100 degrees rotamer is electron transfer from the excited indole to carboxylate. Electron transfer also occurs in the 80 degrees rotamer, but the major quenching process is intramolecular proton transfer. Both quenching processes are suppressed by deprotonation of the amino group. The results for cis-W3 provide compelling evidence that the complex fluorescence decay of the tryptophan zwitterion originates in ground-state heterogeneity with the different lifetimes primarily reflecting different intramolecular excited-state proton- and electron-transfer rates in various rotamers.

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Year:  2002        PMID: 12405862     DOI: 10.1021/ja016542d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Nanosecond dynamics of a mimicked membrane-water interface observed by time-resolved stokes shift of LAURDAN.

Authors:  Michel Vincent; Béatrice de Foresta; Jacques Gallay
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

2.  Effect of short- and long-range interactions on trp rotamer populations determined by site-directed tryptophan fluorescence of tear lipocalin.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  PLoS One       Date:  2013-10-28       Impact factor: 3.240

3.  pH-Dependent conformational changes in tear lipocalin by site-directed tryptophan fluorescence.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Biochemistry       Date:  2010-01-26       Impact factor: 3.162

4.  Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS.

Authors:  Sagar V Kathuria; Can Kayatekin; Raul Barrea; Elena Kondrashkina; Rita Graceffa; Liang Guo; R Paul Nobrega; Srinivas Chakravarthy; C Robert Matthews; Thomas C Irving; Osman Bilsel
Journal:  J Mol Biol       Date:  2014-03-04       Impact factor: 5.469

5.  Exploring protein solution structure: Second moments of fluorescent spectra report heterogeneity of tryptophan rotamers.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2015-06-19       Impact factor: 4.098

6.  Single-spanning membrane protein insertion in membrane mimetic systems: role and localization of aromatic residues.

Authors:  Yves-Marie Coïc; Michel Vincent; Jacques Gallay; Françoise Baleux; Florence Mousson; Veronica Beswick; Jean-Michel Neumann; Béatrice de Foresta
Journal:  Eur Biophys J       Date:  2005-07-15       Impact factor: 1.733

7.  Synthesis of highly selective indole-based sensors for mercuric ion.

Authors:  Huei-Jyun Huang; Jiun-Ly Chir; Hsiu-Jung Cheng; Shau-Jiun Chen; Ching-Han Hu; An-Tai Wu
Journal:  J Fluoresc       Date:  2011-01-15       Impact factor: 2.217

8.  Indole-based fluorescent sensors for selective detection of Hg2+.

Authors:  Yao-Lin Sun; An-Tai Wu
Journal:  J Fluoresc       Date:  2013-03-12       Impact factor: 2.217

9.  Tryptophan rotamer distribution revealed for the α-helix in tear lipocalin by site-directed tryptophan fluorescence.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Phys Chem B       Date:  2012-11-02       Impact factor: 2.991

10.  Fluorescence-based characterization of non-fluorescent transient states of tryptophan - prospects for protein conformation and interaction studies.

Authors:  Heike Hevekerl; Johan Tornmalm; Jerker Widengren
Journal:  Sci Rep       Date:  2016-10-17       Impact factor: 4.379

  10 in total

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