Literature DB >> 12392400

Contact model for the prediction of NMR N-H order parameters in globular proteins.

Fengli Zhang1, Rafael Brüschweiler.   

Abstract

An analytical relationship is presented for the estimation of NMR S2 order parameters of N-HN vectors of the protein backbone from high-resolution protein structures. The relationship solely depends on close contacts of the peptide plane to the rest of the protein. Application of the relationship to a number of proteins with high-resolution X-ray and NMR structures yields S2 values that are in good agreement with the ones determined from experimental relaxation data.

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Year:  2002        PMID: 12392400     DOI: 10.1021/ja027847a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

1.  Prediction of methyl-side chain dynamics in proteins.

Authors:  Dengming Ming; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

2.  Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.

Authors:  N Alpay Temiz; Eva Meirovitch; Ivet Bahar
Journal:  Proteins       Date:  2004-11-15

3.  NMR structure of the noncytotoxic alpha-sarcin mutant Delta(7-22): the importance of the native conformation of peripheral loops for activity.

Authors:  Ma Flor García-Mayoral; Lucia García-Ortega; Ma Pilar Lillo; Jorge Santoro; Alvaro Martínez del Pozo; José G Gavilanes; Manuel Rico; Marta Bruix
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

4.  Backbone assignment of proteins with known structure using residual dipolar couplings.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

Review 5.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

6.  Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM).

Authors:  Kelin Xia; Kristopher Opron; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2015-11-28       Impact factor: 3.488

7.  Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation.

Authors:  Dengming Ming; Rafael Brüschweiler
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

8.  Relation between native ensembles and experimental structures of proteins.

Authors:  Robert B Best; Kresten Lindorff-Larsen; Mark A DePristo; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-07       Impact factor: 11.205

9.  NMR solution structure and backbone dynamics of domain III of the E protein of tick-borne Langat flavivirus suggests a potential site for molecular recognition.

Authors:  Munia Mukherjee; Kaushik Dutta; Mark A White; David Cowburn; Robert O Fox
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

10.  Application of the random coil index to studying protein flexibility.

Authors:  Mark V Berjanskii; David S Wishart
Journal:  J Biomol NMR       Date:  2007-11-06       Impact factor: 2.835

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