Literature DB >> 12390028

Dimerization of human XPA and formation of XPA2-RPA protein complex.

Zheng-guan Yang1, Yang Liu, Leslie Y Mao, Jian-Ting Zhang, Yue Zou.   

Abstract

XPA plays an important role in the DNA damage recognition during human nucleotide excision repair. Here we report that the XPA is a homodimer either in the free state or as a complex with human RPA in solution under normal conditions. The human XPA protein purified from baculovirus-infected sf21 insect cells has a molecular mass of 36 317 Da, as determined by mass spectroscopy. However, the apparent molecular mass of XPA determined by the native gel filtration chromatography was about 71 kDa, suggesting that XPA is a dimer. This observation was supported by a native PFO-PAGE and fluorescence spectroscopy analysis. XPA formed a dimer (XPA2) in a broad range of XPA and NaCl concentrations, and the dimerization was not due to the disulfide bond formation. Furthermore, a titration analysis of the binding of XPA to the human RPA indicated that it was the XPA2 that formed the complex with RPA. Finally, the difference between the mass spectrometric and the calculated masses of XPA implies that the protein contains posttranslational modifications. Taken together, our data suggest that the dimerization of XPA may play an important role in the DNA damage recognition of nucleotide excision repair.

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Year:  2002        PMID: 12390028      PMCID: PMC1450105          DOI: 10.1021/bi026064z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Overexpression and purification of human XPA using a baculovirus expression system.

Authors:  I L Hermanson; J J Turchi
Journal:  Protein Expr Purif       Date:  2000-06       Impact factor: 1.650

2.  Quaternary structure of the chloride channel ClC-2.

Authors:  M Ramjeesingh; C Li; L J Huan; E Garami; Y Wang; C E Bear
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

Review 3.  Three-dimensional structural views of damaged-DNA recognition: T4 endonuclease V, E. coli Vsr protein, and human nucleotide excision repair factor XPA.

Authors:  K Morikawa; M Shirakawa
Journal:  Mutat Res       Date:  2000-08-30       Impact factor: 2.433

4.  Sequential assembly of the nucleotide excision repair factors in vivo.

Authors:  M Volker; M J Moné; P Karmakar; A van Hoffen; W Schul; W Vermeulen; J H Hoeijmakers; R van Driel; A A van Zeeland; L H Mullenders
Journal:  Mol Cell       Date:  2001-07       Impact factor: 17.970

5.  Analysis of the native quaternary structure of vanilloid receptor 1.

Authors:  N Kedei; T Szabo; J D Lile; J J Treanor; Z Olah; M J Iadarola; P M Blumberg
Journal:  J Biol Chem       Date:  2001-05-17       Impact factor: 5.157

6.  Double-check probing of DNA bending and unwinding by XPA-RPA: an architectural function in DNA repair.

Authors:  M Missura; T Buterin; R Hindges; U Hübscher; J Kaspárková; V Brabec; H Naegeli
Journal:  EMBO J       Date:  2001-07-02       Impact factor: 11.598

7.  Hierarchy of DNA damage recognition in Escherichia coli nucleotide excision repair.

Authors:  Y Zou; C Luo; N E Geacintov
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

8.  Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies.

Authors:  G W Buchko; G W Daughdrill; R de Lorimier; K Rao B; N G Isern; J M Lingbeck; J S Taylor; M S Wold; M Gochin; L D Spicer; D F Lowry; M A Kennedy
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

9.  Aberrant mobility phenomena of the DNA repair protein XPA.

Authors:  L M Iakoucheva; A L Kimzey; C D Masselon; R D Smith; A K Dunker; E J Ackerman
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

10.  Recognition and incision of site-specifically modified C8 guanine adducts formed by 2-aminofluorene, N-acetyl-2-aminofluorene and 1-nitropyrene by UvrABC nuclease.

Authors:  C Luo; R Krishnasamy; A K Basu; Y Zou
Journal:  Nucleic Acids Res       Date:  2000-10-01       Impact factor: 16.971

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  30 in total

1.  Nucleotide excision repair by mutant xeroderma pigmentosum group A (XPA) proteins with deficiency in interaction with RPA.

Authors:  Masafumi Saijo; Arato Takedachi; Kiyoji Tanaka
Journal:  J Biol Chem       Date:  2010-12-09       Impact factor: 5.157

2.  Specific and efficient binding of xeroderma pigmentosum complementation group A to double-strand/single-strand DNA junctions with 3'- and/or 5'-ssDNA branches.

Authors:  Zhengguan Yang; Marina Roginskaya; Laureen C Colis; Ashis K Basu; Steven M Shell; Yiyong Liu; Phillip R Musich; Constance M Harris; Thomas M Harris; Yue Zou
Journal:  Biochemistry       Date:  2006-12-19       Impact factor: 3.162

3.  Deamidation destabilizes and triggers aggregation of a lens protein, betaA3-crystallin.

Authors:  Takumi Takata; Julie T Oxford; Borries Demeler; Kirsten J Lampi
Journal:  Protein Sci       Date:  2008-06-20       Impact factor: 6.725

4.  Structural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA).

Authors:  Sandra C Koch; Jochen Kuper; Karola L Gasteiger; Nina Simon; Ralf Strasser; David Eisen; Simon Geiger; Sabine Schneider; Caroline Kisker; Thomas Carell
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

5.  Structure and conformational change of a replication protein A heterotrimer bound to ssDNA.

Authors:  Jie Fan; Nikola P Pavletich
Journal:  Genes Dev       Date:  2012-10-15       Impact factor: 11.361

Review 6.  XPA: A key scaffold for human nucleotide excision repair.

Authors:  Norie Sugitani; Robert M Sivley; Kelly E Perry; John A Capra; Walter J Chazin
Journal:  DNA Repair (Amst)       Date:  2016-05-20

7.  Modulation of replication protein A function by its hyperphosphorylation-induced conformational change involving DNA binding domain B.

Authors:  Yiyong Liu; Mamuka Kvaratskhelia; Sonja Hess; Youxing Qu; Yue Zou
Journal:  J Biol Chem       Date:  2005-07-09       Impact factor: 5.157

8.  Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA.

Authors:  Steven M Shell; Sonja Hess; Mamuka Kvaratskhelia; Yue Zou
Journal:  Biochemistry       Date:  2005-01-25       Impact factor: 3.162

9.  Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates.

Authors:  Norie Sugitani; Markus W Voehler; Michelle S Roh; Agnieszka M Topolska-Woś; Walter J Chazin
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

10.  Binding of the human nucleotide excision repair proteins XPA and XPC/HR23B to the 5R-thymine glycol lesion and structure of the cis-(5R,6S) thymine glycol epimer in the 5'-GTgG-3' sequence: destabilization of two base pairs at the lesion site.

Authors:  Kyle L Brown; Marina Roginskaya; Yue Zou; Alvin Altamirano; Ashis K Basu; Michael P Stone
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971

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