Literature DB >> 12388776

Molecular evidence of HIV-1 transmission in a criminal case.

Michael L Metzker1, David P Mindell, Xiao-Mei Liu, Roger G Ptak, Richard A Gibbs, David M Hillis.   

Abstract

A gastroenterologist was convicted of attempted second-degree murder by injecting his former girlfriend with blood or blood-products obtained from an HIV type 1 (HIV-1)-infected patient under his care. Phylogenetic analyses of HIV-1 sequences were admitted and used as evidence in this case, representing the first use of phylogenetic analyses in a criminal court case in the United States. Phylogenetic analyses of HIV-1 reverse transcriptase and env DNA sequences isolated from the victim, the patient, and a local population sample of HIV-1-positive individuals showed the victim's HIV-1 sequences to be most closely related to and nested within a lineage comprised of the patient's HIV-1 sequences. This finding of paraphyly for the patient's sequences was consistent with the direction of transmission from the patient to the victim. Analysis of the victim's viral reverse transcriptase sequences revealed genotypes consistent with known mutations that confer resistance to AZT, similar to those genotypes found in the patient. A priori establishment of the patient and victim as a suspected transmission pair provided a clear hypothesis for phylogenetic testing. All phylogenetic models and both genes examined strongly supported the close relationship between the HIV-1 sequences of the patient and the victim. Resampling of blood from the suspected transmission pair and independent sequencing by different laboratories provided precaution against laboratory error.

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Year:  2002        PMID: 12388776      PMCID: PMC137877          DOI: 10.1073/pnas.222522599

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Authors:  T F Wolfs; G Zwart; M Bakker; J Goudsmit
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Authors:  C A Boucher; E O'Sullivan; J W Mulder; C Ramautarsing; P Kellam; G Darby; J M Lange; J Goudsmit; B A Larder
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5.  Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock.

Authors:  A Zharkikh; W H Li
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6.  Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock.

Authors:  A Zharkikh; W H Li
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8.  Molecular epidemiology of HIV transmission in a dental practice.

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10.  Fifth mutation in human immunodeficiency virus type 1 reverse transcriptase contributes to the development of high-level resistance to zidovudine.

Authors:  P Kellam; C A Boucher; B A Larder
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-01       Impact factor: 11.205

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  55 in total

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5.  HIV phylogenetics.

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7.  Profile of David M. Hillis. Interview by Sujata Gupta.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

8.  A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study.

Authors:  Zhigang Han; Tommy W C Leung; Jinkou Zhao; Ming Wang; Lirui Fan; Kai Li; Xinli Pang; Zhenbo Liang; Wilina W L Lim; Huifang Xu
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9.  primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.

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10.  Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries.

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