Literature DB >> 12388732

Unique characteristics of a picornavirus internal ribosome entry site from the porcine teschovirus-1 talfan.

Yoshihiro Kaku1, Louisa S Chard, Toru Inoue, Graham J Belsham.   

Abstract

The teschoviruses constitute a recently defined picornavirus genus. Most of the genome sequence of the porcine teschovirus-1 (PTV) Talfan and several other strains is known. We now demonstrate that initiation of protein synthesis occurs at nucleotide (nt) 412 on the PTV Talfan RNA and that nt 1 to 405 contains an internal ribosome entry site (IRES) that functions efficiently in vitro and within mammalian cells. In comparison with other picornavirus IRES elements, the PTV IRES is relatively short and lacks a significant polypyrimidine tract near the 3' end. Expression of an enterovirus 2A protease, which induces cleavage of eIF4G within the translation initiation complex eIF4F, has little effect on the PTV IRES activity within BHK cells. The PTV IRES has a unique set of properties and represents a new class of picornavirus IRES element.

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Year:  2002        PMID: 12388732      PMCID: PMC136790          DOI: 10.1128/jvi.76.22.11721-11728.2002

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  23 in total

1.  Conserved RNA secondary structures in Picornaviridae genomes.

Authors:  C Witwer; S Rauscher; I L Hofacker; P F Stadler
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  Virus taxonomy at the XIth International Congress of Virology, Sydney, Australia, 1999.

Authors:  C R Pringle
Journal:  Arch Virol       Date:  1999       Impact factor: 2.574

3.  Genetic reclassification of porcine enteroviruses.

Authors:  Yoshihiro Kaku; Akinori Sarai; Yosuke Murakami
Journal:  J Gen Virol       Date:  2001-02       Impact factor: 3.891

4.  Porcine teschoviruses comprise at least eleven distinct serotypes: molecular and evolutionary aspects.

Authors:  R Zell; M Dauber; A Krumbholz; A Henke; E Birch-Hirschfeld; A Stelzner; D Prager; R Wurm
Journal:  J Virol       Date:  2001-02       Impact factor: 5.103

5.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  Activity of the hepatitis A virus IRES requires association between the cap-binding translation initiation factor (eIF4E) and eIF4G.

Authors:  I K Ali; L McKendrick; S J Morley; R J Jackson
Journal:  J Virol       Date:  2001-09       Impact factor: 5.103

7.  Detailed analysis of the requirements of hepatitis A virus internal ribosome entry segment for the eukaryotic initiation factor complex eIF4F.

Authors:  A M Borman; Y M Michel; K M Kean
Journal:  J Virol       Date:  2001-09       Impact factor: 5.103

8.  Sequence analysis of a porcine enterovirus serotype 1 isolate: relationships with other picornaviruses.

Authors:  Michelle Doherty; Daniel Todd; Neil McFerran; Elizabeth M Hoey
Journal:  J Gen Virol       Date:  1999-08       Impact factor: 3.891

9.  The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs.

Authors:  R Rijnbrand; P J Bredenbeek; P C Haasnoot; J S Kieft; W J Spaan; S M Lemon
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

10.  An attenuating mutation in the 2A protease of swine vesicular disease virus, a picornavirus, regulates cap- and internal ribosome entry site-dependent protein synthesis.

Authors:  Y Sakoda; N Ross-Smith; T Inoue; G J Belsham
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

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  16 in total

1.  A small yeast RNA inhibits HCV IRES mediated translation and inhibits replication of poliovirus in vivo.

Authors:  Xue-Song Liang; Jian-Qi Lian; Yong-Xing Zhou; Qing-He Nie; Chun-Qiu Hao
Journal:  World J Gastroenterol       Date:  2003-05       Impact factor: 5.742

2.  A distinct group of hepacivirus/pestivirus-like internal ribosomal entry sites in members of diverse picornavirus genera: evidence for modular exchange of functional noncoding RNA elements by recombination.

Authors:  Christopher U T Hellen; Sylvain de Breyne
Journal:  J Virol       Date:  2007-03-28       Impact factor: 5.103

3.  Comparative analysis of the large fragment of the 5' untranslated region (LF-5' UTR) of serotype A foot-and-mouth disease virus field isolates from India.

Authors:  Jajati K Mohapatra; Abhipsa Sahu; Sushanta K Barik; Aniket Sanyal; Bramhadev Pattnaik
Journal:  Virus Genes       Date:  2009-05-15       Impact factor: 2.332

4.  Functional analyses of RNA structures shared between the internal ribosome entry sites of hepatitis C virus and the picornavirus porcine teschovirus 1 Talfan.

Authors:  Louisa S Chard; Yoshihiro Kaku; Barbara Jones; Arabinda Nayak; Graham J Belsham
Journal:  J Virol       Date:  2006-02       Impact factor: 5.103

Review 5.  Bridging IRES elements in mRNAs to the eukaryotic translation apparatus.

Authors:  Kerry D Fitzgerald; Bert L Semler
Journal:  Biochim Biophys Acta       Date:  2009-07-23

6.  Monocistronic mRNAs containing defective hepatitis C virus-like picornavirus internal ribosome entry site elements in their 5' untranslated regions are efficiently translated in cells by a cap-dependent mechanism.

Authors:  Graham J Belsham; Inge Nielsen; Preben Normann; Elizabeth Royall; Lisa O Roberts
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

7.  Structural features of the Seneca Valley virus internal ribosome entry site (IRES) element: a picornavirus with a pestivirus-like IRES.

Authors:  Margaret M Willcocks; Nicolas Locker; Zarmwa Gomwalk; Elizabeth Royall; Mehran Bakhshesh; Graham J Belsham; Neeraja Idamakanti; Kevin D Burroughs; P Seshidhar Reddy; Paul L Hallenbeck; Lisa O Roberts
Journal:  J Virol       Date:  2011-02-16       Impact factor: 5.103

8.  Functional and structural similarities between the internal ribosome entry sites of hepatitis C virus and porcine teschovirus, a picornavirus.

Authors:  Andrey V Pisarev; Louisa S Chard; Yoshihiro Kaku; Helen L Johns; Ivan N Shatsky; Graham J Belsham
Journal:  J Virol       Date:  2004-05       Impact factor: 5.103

9.  The picornavirus avian encephalomyelitis virus possesses a hepatitis C virus-like internal ribosome entry site element.

Authors:  Mehran Bakhshesh; Elisabetta Groppelli; Margaret M Willcocks; Elizabeth Royall; Graham J Belsham; Lisa O Roberts
Journal:  J Virol       Date:  2007-12-12       Impact factor: 5.103

10.  Conserved nucleotides within the J domain of the encephalomyocarditis virus internal ribosome entry site are required for activity and for interaction with eIF4G.

Authors:  Angela T Clark; Morwenna E M Robertson; Graeme L Conn; Graham J Belsham
Journal:  J Virol       Date:  2003-12       Impact factor: 5.103

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