Literature DB >> 12387273

Caution on pedigree haplotype inference with software that assumes linkage equilibrium.

Daniel J Schaid, Shannon K McDonnell, Liang Wang, Julie M Cunningham, Stephen N Thibodeau.   

Abstract

Mesh：

Year:  2002        PMID： 12387273      PMCID： PMC378555          DOI： 10.1086/342666

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


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  12 in total

1.  Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information.

Authors:  K Rohde; R Fuerst
Journal:  Hum Mutat       Date:  2001-04       Impact factor: 4.878

2.  Score tests for association between traits and haplotypes when linkage phase is ambiguous.

Authors:  Daniel J Schaid; Charles M Rowland; David E Tines; Robert M Jacobson; Gregory A Poland
Journal:  Am J Hum Genet       Date:  2001-12-27       Impact factor: 11.025

3.  Linkage disequilibrium in the human genome.

Authors:  D E Reich; M Cargill; S Bolk; J Ireland; P C Sabeti; D J Richter; T Lavery; R Kouyoumjian; S F Farhadian; R Ward; E S Lander
Journal:  Nature       Date:  2001-05-10       Impact factor: 49.962

4.  Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data.

Authors:  D Fallin; N J Schork
Journal:  Am J Hum Genet       Date:  2000-08-22       Impact factor: 11.025

5.  Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics.

Authors:  E Sobel; K Lange
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

6.  Parametric and nonparametric linkage analysis: a unified multipoint approach.

Authors:  L Kruglyak; M J Daly; M P Reeve-Daly; E S Lander
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

7.  HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

Authors:  M E Hawley; K K Kidd
Journal:  J Hered       Date:  1995 Sep-Oct       Impact factor: 2.645

8.  Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population.

Authors:  L Excoffier; M Slatkin
Journal:  Mol Biol Evol       Date:  1995-09       Impact factor: 16.240

9.  An E-M algorithm and testing strategy for multiple-locus haplotypes.

Authors:  J C Long; R C Williams; M Urbanek
Journal:  Am J Hum Genet       Date:  1995-03       Impact factor: 11.025

10.  Germline mutations in the ribonuclease L gene in families showing linkage with HPC1.

Authors:  J Carpten; N Nupponen; S Isaacs; R Sood; C Robbins; J Xu; M Faruque; T Moses; C Ewing; E Gillanders; P Hu; P Bujnovszky; I Makalowska; A Baffoe-Bonnie; D Faith; J Smith; D Stephan; K Wiley; M Brownstein; D Gildea; B Kelly; R Jenkins; G Hostetter; M Matikainen; J Schleutker; K Klinger; T Connors; Y Xiang; Z Wang; A De Marzo; N Papadopoulos; O-P Kallioniemi; R Burk; D Meyers; H Grönberg; P Meltzer; R Silverman; J Bailey-Wilson; P Walsh; W Isaacs; J Trent
Journal:  Nat Genet       Date:  2002-01-22       Impact factor: 38.330
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  43 in total

1.  Hierarchical modeling of linkage disequilibrium: genetic structure and spatial relations.

Authors:  David V Conti; John S Witte
Journal:  Am J Hum Genet       Date:  2003-01-13       Impact factor: 11.025

2.  Haplotype and missing data inference in nuclear families.

Authors:  Shin Lin; Aravinda Chakravarti; David J Cutler
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

3.  Guidelines for genotyping in genomewide linkage studies: single-nucleotide-polymorphism maps versus microsatellite maps.

Authors:  David M Evans; Lon R Cardon
Journal:  Am J Hum Genet       Date:  2004-08-13       Impact factor: 11.025

4.  PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Authors:  Alejandro Q Nato; Nicola H Chapman; Harkirat K Sohi; Hiep D Nguyen; Zoran Brkanac; Ellen M Wijsman
Journal:  Bioinformatics       Date:  2015-07-30       Impact factor: 6.937

5.  Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis.

Authors:  Qiqing Huang; Sanjay Shete; Christopher I Amos
Journal:  Am J Hum Genet       Date:  2004-10-18       Impact factor: 11.025

6.  Constructing the parental linkage phase and the genetic map over distances <1 cM using pooled haploid DNA.

Authors:  Dario Gasbarra; Mikko J Sillanpää
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

7.  Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers.

Authors:  Gonçalo R Abecasis; Janis E Wigginton
Journal:  Am J Hum Genet       Date:  2005-09-20       Impact factor: 11.025

8.  Detecting genome wide haplotype sharing using SNP or microsatellite haplotype data.

Authors:  Melanie Bahlo; Jim Stankovich; Terence P Speed; Justin P Rubio; Rachel K Burfoot; Simon J Foote
Journal:  Hum Genet       Date:  2005-12-14       Impact factor: 4.132

9.  Susceptibility genes for age-related maculopathy on chromosome 10q26.

Authors:  Johanna Jakobsdottir; Yvette P Conley; Daniel E Weeks; Tammy S Mah; Robert E Ferrell; Michael B Gorin
Journal:  Am J Hum Genet       Date:  2005-07-26       Impact factor: 11.025

Review 10.  Haplotyping methods for pedigrees.

Authors:  Guimin Gao; David B Allison; Ina Hoeschele
Journal:  Hum Hered       Date:  2009-01-27       Impact factor: 0.444
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