Literature DB >> 12384585

Characterization of DNA synthesis catalyzed by bacteriophage T4 replication complexes reconstituted on synthetic circular substrates.

Farid A Kadyrov1, John W Drake.   

Abstract

Replication complexes were reconstituted using the eight purified bacteriophage T4 replication proteins and synthetic circular 70-, 120- or 240-nt DNA substrates annealed to a leading-strand primer. To differentiate leading strands from lagging strands, the circular parts of the substrates lacked dCMP; thus, no dCTP was required for leading-strand synthesis and no dGTP for lagging-strand synthesis. The size of the substrates was crucial, the longer substrates supporting much more DNA synthesis. Leading and lagging strands were synthesized in a coupled manner. Specifically targeting leading-strand synthesis by decreasing the concentration of dGTP decreased the rate of extension of leading strands. However, blocking lagging-strand synthesis by lowering the dCTP concentration, by omitting dCTP altogether, by adding ddCTP, or with a single abasic site had no immediate effect on the rate of extension of leading strands.

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Year:  2002        PMID: 12384585      PMCID: PMC137140          DOI: 10.1093/nar/gkf576

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  Molecular mechanisms of the functional coupling of the helicase (gp41) and polymerase (gp43) of bacteriophage T4 within the DNA replication fork.

Authors:  E Delagoutte; P H von Hippel
Journal:  Biochemistry       Date:  2001-04-10       Impact factor: 3.162

2.  UV lesions located on the leading strand inhibit DNA replication but do not inhibit SV40 T-antigen helicase activity.

Authors:  X Veaute; G Mari-Giglia; C W Lawrence; A Sarasin
Journal:  Mutat Res       Date:  2000-02-16       Impact factor: 2.433

Review 3.  Recombinational DNA repair of damaged replication forks in Escherichia coli: questions.

Authors:  M M Cox
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

4.  Conditional coupling of leading-strand and lagging-strand DNA synthesis at bacteriophage T4 replication forks.

Authors:  F A Kadyrov; J W Drake
Journal:  J Biol Chem       Date:  2001-06-04       Impact factor: 5.157

5.  Bacteriophage T4 RNase H removes both RNA primers and adjacent DNA from the 5' end of lagging strand fragments.

Authors:  M Bhagwat; N G Nossal
Journal:  J Biol Chem       Date:  2001-05-25       Impact factor: 5.157

6.  The ATP-activated hexameric helicase of bacteriophage T4 (gp41) forms a stable primosome with a single subunit of T4-coded primase (gp61).

Authors:  F Dong; P H von Hippel
Journal:  J Biol Chem       Date:  1996-08-09       Impact factor: 5.157

7.  Postreplication repair of DNA in ultraviolet-irradiated mammalian cells.

Authors:  A R Lehmann
Journal:  J Mol Biol       Date:  1972-05-28       Impact factor: 5.469

8.  Replication of ultraviolet-irradiated simian virus 40 in monkey kidney cells.

Authors:  A R Sarasin; P C Hanawalt
Journal:  J Mol Biol       Date:  1980-04       Impact factor: 5.469

9.  T4-endonuclease V-sensitive sites in DNA from ultraviolet-irradiated human cells.

Authors:  R Meneghini; P Hanawalt
Journal:  Biochim Biophys Acta       Date:  1976-04-02

10.  RNA priming of DNA replication by bacteriophage T4 proteins.

Authors:  N G Nossal
Journal:  J Biol Chem       Date:  1980-03-10       Impact factor: 5.157

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  5 in total

1.  Coordinated leading and lagging strand DNA synthesis by using the herpes simplex virus 1 replication complex and minicircle DNA templates.

Authors:  Gudrun Stengel; Robert D Kuchta
Journal:  J Virol       Date:  2010-11-10       Impact factor: 5.103

2.  Accessory proteins assist exonuclease-deficient bacteriophage T4 DNA polymerase in replicating past an abasic site.

Authors:  Giuseppina Blanca; Emmanuelle Delagoutte; Nicolas Tanguy le Gac; Neil P Johnson; Giuseppe Baldacci; Giuseppe Villani
Journal:  Biochem J       Date:  2007-03-01       Impact factor: 3.857

3.  RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins.

Authors:  Scott W Nelson; Ravindra Kumar; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

4.  Response of the bacteriophage T4 replisome to noncoding lesions and regression of a stalled replication fork.

Authors:  Scott W Nelson; Stephen J Benkovic
Journal:  J Mol Biol       Date:  2010-06-25       Impact factor: 5.469

Review 5.  Replisome dynamics and use of DNA trombone loops to bypass replication blocks.

Authors:  Nina Y Yao; Mike O'Donnell
Journal:  Mol Biosyst       Date:  2008-09-18
  5 in total

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