Literature DB >> 11390383

Conditional coupling of leading-strand and lagging-strand DNA synthesis at bacteriophage T4 replication forks.

F A Kadyrov1, J W Drake.   

Abstract

Eight proteins encoded by bacteriophage T4 are required for the replicative synthesis of the leading and lagging strands of T4 DNA. We show here that active T4 replication forks, which catalyze the coordinated synthesis of leading and lagging strands, remain stable in the face of dilution provided that the gp44/62 clamp loader, the gp45 sliding clamp, and the gp32 ssDNA-binding protein are present at sufficient levels after dilution. If any of these accessory proteins is omitted from the dilution mixture, uncoordinated DNA synthesis occurs, and/or large Okazaki fragments are formed. Thus, the accessory proteins must be recruited from solution for each round of initiation of lagging-strand synthesis. A modified bacteriophage T7 DNA polymerase (Sequenase) can replace the T4 DNA polymerase for leading-strand synthesis but not for well coordinated lagging-strand synthesis. Although T4 DNA polymerase has been reported to self-associate, gel-exclusion chromatography displays it as a monomer in solution in the absence of DNA. It forms no stable holoenzyme complex in solution with the accessory proteins or with the gp41-gp61 helicase-primase. Instead, template DNA is required for the assembly of the T4 replication complex, which then catalyzes coordinated synthesis of leading and lagging strands in a conditionally coupled manner.

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Year:  2001        PMID: 11390383     DOI: 10.1074/jbc.M101310200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

1.  Characterization of DNA synthesis catalyzed by bacteriophage T4 replication complexes reconstituted on synthetic circular substrates.

Authors:  Farid A Kadyrov; John W Drake
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

2.  T4 replication: what does "processivity" really mean?

Authors:  Catherine M Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

3.  Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy.

Authors:  Anna Bebenek; Geraldine T Carver; Farid A Kadyrov; Grace E Kissling; John W Drake
Journal:  Genetics       Date:  2005-02-03       Impact factor: 4.562

4.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

5.  RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins.

Authors:  Scott W Nelson; Ravindra Kumar; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

6.  Seeing a molecular machine self-renew.

Authors:  Xinghua Shi; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-16       Impact factor: 11.205

Review 7.  When proteins play tag: the dynamic nature of the replisome.

Authors:  Stefan H Mueller; Lisanne M Spenkelink; Antoine M van Oijen
Journal:  Biophys Rev       Date:  2019-07-04

8.  RNA primer-primase complexes serve as the signal for polymerase recycling and Okazaki fragment initiation in T4 phage DNA replication.

Authors:  Michelle M Spiering; Philip Hanoian; Swathi Gannavaram; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

Review 9.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

Review 10.  Timing, coordination, and rhythm: acrobatics at the DNA replication fork.

Authors:  Samir M Hamdan; Antoine M van Oijen
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

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