Literature DB >> 12384402

Locus control regions.

Qiliang Li1, Kenneth R Peterson, Xiangdong Fang, George Stamatoyannopoulos.   

Abstract

Locus control regions (LCRs) are operationally defined by their ability to enhance the expression of linked genes to physiological levels in a tissue-specific and copy number-dependent manner at ectopic chromatin sites. Although their composition and locations relative to their cognate genes are different, LCRs have been described in a broad spectrum of mammalian gene systems, suggesting that they play an important role in the control of eukaryotic gene expression. The discovery of the LCR in the beta-globin locus and the characterization of LCRs in other loci reinforces the concept that developmental and cell lineage-specific regulation of gene expression relies not on gene-proximal elements such as promoters, enhancers, and silencers exclusively, but also on long-range interactions of various cis regulatory elements and dynamic chromatin alterations.

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Year:  2002        PMID: 12384402      PMCID: PMC2811695          DOI: 10.1182/blood-2002-04-1104

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  136 in total

Review 1.  Looping, linking, and chromatin activity: new insights into beta-globin locus regulation.

Authors:  J D Engel; K Tanimoto
Journal:  Cell       Date:  2000-03-03       Impact factor: 41.582

2.  Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes.

Authors:  K J Polach; P T Lowary; J Widom
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

3.  Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus.

Authors:  D Schübeler; C Francastel; D M Cimbora; A Reik; D I Martin; M Groudine
Journal:  Genes Dev       Date:  2000-04-15       Impact factor: 11.361

4.  Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites.

Authors:  J D Anderson; J Widom
Journal:  J Mol Biol       Date:  2000-03-03       Impact factor: 5.469

5.  Control of organ-specific demethylation by an element of the T-cell receptor-alpha locus control region.

Authors:  B Santoso; B D Ortiz; A Winoto
Journal:  J Biol Chem       Date:  2000-01-21       Impact factor: 5.157

6.  An Alu element from the K18 gene confers position-independent expression in transgenic mice.

Authors:  D A Willoughby; A Vilalta; R G Oshima
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

7.  Structural analysis and mapping of DNase I hypersensitivity of HS5 of the beta-globin locus control region.

Authors:  Q Li; M Zhang; Z Duan; G Stamatoyannopoulos
Journal:  Genomics       Date:  1999-10-15       Impact factor: 5.736

8.  Targeted recruitment of histone acetyltransferase activity to a locus control region.

Authors:  F Elefant; N E Cooke; S A Liebhaber
Journal:  J Biol Chem       Date:  2000-05-05       Impact factor: 5.157

9.  Stable and full rescue of the pigmentation in a medaka albino mutant by transfer of a 17 kb genomic clone containing the medaka tyrosinase gene.

Authors:  L Fu; M Mambrini; E Perrot; D Chourrout
Journal:  Gene       Date:  2000-01-11       Impact factor: 3.688

10.  The human growth hormone gene cluster locus control region supports position-independent pituitary- and placenta-specific expression in the transgenic mouse.

Authors:  Y Su; S A Liebhaber; N E Cooke
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

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  167 in total

1.  DNase I hypersensitive site II of the human growth hormone locus control region mediates an essential and distinct long-range enhancer function.

Authors:  Margaret R Fleetwood; Yugong Ho; Nancy E Cooke; Stephen A Liebhaber
Journal:  J Biol Chem       Date:  2012-06-05       Impact factor: 5.157

2.  Balancing immunity and tolerance: genetic footprint of natural selection in the transcriptional regulatory region of HLA-G.

Authors:  L Gineau; P Luisi; E C Castelli; J Milet; D Courtin; N Cagnin; B Patillon; H Laayouni; P Moreau; E A Donadi; A Garcia; A Sabbagh
Journal:  Genes Immun       Date:  2014-11-13       Impact factor: 2.676

Review 3.  Safe harbours for the integration of new DNA in the human genome.

Authors:  Michel Sadelain; Eirini P Papapetrou; Frederic D Bushman
Journal:  Nat Rev Cancer       Date:  2011-12-01       Impact factor: 60.716

4.  Histone deacetylase 9 activates gamma-globin gene expression in primary erythroid cells.

Authors:  Shalini A Muralidhar; Valya Ramakrishnan; Inderdeep S Kalra; Wei Li; Betty S Pace
Journal:  J Biol Chem       Date:  2010-11-13       Impact factor: 5.157

5.  Autoimmune vitiligo is associated with gain-of-function by a transcriptional regulator that elevates expression of HLA-A*02:01 in vivo.

Authors:  Masahiro Hayashi; Ying Jin; Daniel Yorgov; Stephanie A Santorico; James Hagman; Tracey M Ferrara; Kenneth L Jones; Giulio Cavalli; Charles A Dinarello; Richard A Spritz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

6.  Characterization of the enhancer element of the Danio rerio minor globin gene locus.

Authors:  Anastasia V Nefedochkina; Natalia V Petrova; Elena S Ioudinkova; Anastasia P Kovina; Olga V Iarovaia; Sergey V Razin
Journal:  Histochem Cell Biol       Date:  2016-02-04       Impact factor: 4.304

7.  Adapting in vitro embryonic stem cell differentiation to the study of locus control regions.

Authors:  Armin Lahiji; Martina Kučerová-Levisohn; Roxanne Holmes; Juan Carlos Zúñiga-Pflücker; Benjamin D Ortiz
Journal:  J Immunol Methods       Date:  2014-03-26       Impact factor: 2.303

Review 8.  Role of transcription factors C/EBPalpha and PU.1 in normal hematopoiesis and leukemia.

Authors:  Steffen Koschmieder; Frank Rosenbauer; Ulrich Steidl; Bronwyn M Owens; Daniel G Tenen
Journal:  Int J Hematol       Date:  2005-06       Impact factor: 2.490

Review 9.  Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Authors:  Aishwarya Gurumurthy; Yong Shen; Eliot M Gunn; Jörg Bungert
Journal:  Bioessays       Date:  2018-11-30       Impact factor: 4.345

Review 10.  Control of globin gene expression during development and erythroid differentiation.

Authors:  George Stamatoyannopoulos
Journal:  Exp Hematol       Date:  2005-03       Impact factor: 3.084

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