Literature DB >> 12379653

Essential amino acid residues in the single-stranded DNA-binding protein of bacteriophage T7. Identification of the dimer interface.

Lisa F Rezende1, Thomas Hollis, Tom Ellenberger, Charles C Richardson.   

Abstract

Gene 2.5 of bacteriophage T7 is an essential gene that encodes a single-stranded DNA-binding protein. T7 phage with gene 2.5 deleted can grow only on Escherichia coli cells that express gene 2.5 from a plasmid. This complementation assay was used to screen for lethal mutations in gene 2.5. By screening a library of randomly mutated plasmids encoding gene 2.5, we identified 20 different single amino acid alterations in gene 2.5 protein that are lethal in vivo. The location of these essential residues within the three-dimensional structure of gene 2.5 protein assists in the identification of motifs in the protein. In this study we show that a subset of these alterations defines the dimer interface of gene 2.5 protein predicted by the crystal structure. Recombinantly expressed and purified gene 2.5 protein-P22L, gene 2.5 protein-F31S, and gene 2.5 protein-G36S do not form dimers at salt concentrations where the wild-type gene 2.5 protein exists as a dimer. The basis of the lethality of these mutations in vivo is not known because altered proteins retain the ability to bind single-stranded DNA, anneal complementary strands of DNA, and interact with T7 DNA polymerase.

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Year:  2002        PMID: 12379653     DOI: 10.1074/jbc.M207359200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

1.  A unique loop in T7 DNA polymerase mediates the binding of helicase-primase, DNA binding protein, and processivity factor.

Authors:  Samir M Hamdan; Boriana Marintcheva; Timothy Cook; Seung-Joo Lee; Stanley Tabor; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

2.  Flap endonuclease activity of gene 6 exonuclease of bacteriophage T7.

Authors:  Hitoshi Mitsunobu; Bin Zhu; Seung-Joo Lee; Stanley Tabor; Charles C Richardson
Journal:  J Biol Chem       Date:  2014-01-06       Impact factor: 5.157

3.  C-terminal phenylalanine of bacteriophage T7 single-stranded DNA-binding protein is essential for strand displacement synthesis by T7 DNA polymerase at a nick in DNA.

Authors:  Sharmistha Ghosh; Boriana Marintcheva; Masateru Takahashi; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-09-02       Impact factor: 5.157

4.  Bypass of a nick by the replisome of bacteriophage T7.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-06-23       Impact factor: 5.157

5.  Coupling mutagenesis and parallel deep sequencing to probe essential residues in a genome or gene.

Authors:  William P Robins; Shah M Faruque; John J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

6.  Helicase and polymerase move together close to the fork junction and copy DNA in one-nucleotide steps.

Authors:  Manjula Pandey; Smita S Patel
Journal:  Cell Rep       Date:  2014-03-13       Impact factor: 9.423

Review 7.  Bacteriophage protein-protein interactions.

Authors:  Roman Häuser; Sonja Blasche; Terje Dokland; Elisabeth Haggård-Ljungquist; Albrecht von Brunn; Margarita Salas; Sherwood Casjens; Ian Molineux; Peter Uetz
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

8.  Interaction of bacteriophage T4 and T7 single-stranded DNA-binding proteins with DNA.

Authors:  Leila Shokri; Ioulia Rouzina; Mark C Williams
Journal:  Phys Biol       Date:  2009-07-01       Impact factor: 2.583

Review 9.  Gp2.5, the multifunctional bacteriophage T7 single-stranded DNA binding protein.

Authors:  Alfredo J Hernandez; Charles C Richardson
Journal:  Semin Cell Dev Biol       Date:  2018-03-28       Impact factor: 7.727

10.  Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA.

Authors:  Leila Shokri; Boriana Marintcheva; Mootaz Eldib; Andreas Hanke; Ioulia Rouzina; Mark C Williams
Journal:  Nucleic Acids Res       Date:  2008-09-04       Impact factor: 16.971

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