Literature DB >> 12372319

Preliminary crystallographic analysis of the bacteriophage P22 portal protein.

Gino Cingolani1, Sean D Moore, Peter E Prevelige, John E Johnson.   

Abstract

Portal proteins are components of large oligomeric dsDNA pumps connecting the icosahedral capsid of tailed bacteriophages to the tail. Prior to the tail attachment, dsDNA is actively pumped through a central cavity formed by the subunits. We have studied the portal protein of bacteriophage P22, which is the largest connector characterized among the tailed bacteriophages. The molecular weight of the monomer is 82.7 kDa, and it spontaneously assembles into an oligomeric structure of approximately 1.0 MDa. Here we present a preliminary biochemical and crystallographic characterization of this large macromolecular complex. The main difficulties related to the crystallization of P22 portal protein lay in the intrinsic dynamic nature of the portal oligomer. Recombinant connectors assembled from portal monomers expressed in Escherichia coli form rings of different stoichiometry in solution, which cannot be separated on the basis of their size. To overcome this intrinsic heterogeneity we devised a biochemical purification that separates different ring populations on the basis of their charge. Small ordered crystals were grown from drops containing a high concentration of the kosmotropic agent tert-butanol and used for data collection. A preliminary crystallographic analysis to 7.0-A resolution revealed that the P22 portal protein crystallized in space group I4 with unit cell dimensions a=b=409.4A, c=260.4A. This unit cell contains a total of eight connectors. Analysis of the noncrystallographic symmetry by the self-rotation function unambiguously confirmed that bacteriophage P22 portal protein is a dodecamer with a periodicity of 30 degrees. The cryo-EM reconstruction of the dodecahedral bacteriophage T3 portal protein will be used as a model to initiate phase extension and structure determination.

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Year:  2002        PMID: 12372319     DOI: 10.1016/s1047-8477(02)00512-9

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  25 in total

1.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

2.  Identification of a region in the herpes simplex virus scaffolding protein required for interaction with the portal.

Authors:  Gregory P Singer; William W Newcomb; Darrel R Thomsen; Fred L Homa; Jay C Brown
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

3.  Structure and polymorphism of the UL6 portal protein of herpes simplex virus type 1.

Authors:  Benes L Trus; Naiqian Cheng; William W Newcomb; Fred L Homa; Jay C Brown; Alasdair C Steven
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

4.  Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6.

Authors:  Nelli J Karhu; Gabija Ziedaite; Dennis H Bamford; Jaana K H Bamford
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

5.  The effect of N- or C-terminal alterations of the connector of bacteriophage phi29 DNA packaging motor on procapsid assembly, pRNA binding, and DNA packaging.

Authors:  Ying Cai; Feng Xiao; Peixuan Guo
Journal:  Nanomedicine       Date:  2008-01-16       Impact factor: 5.307

6.  Determination of stoichiometry and conformational changes in the first step of the P22 tail assembly.

Authors:  Kristina Lorenzen; Adam S Olia; Charlotte Uetrecht; Gino Cingolani; Albert J R Heck
Journal:  J Mol Biol       Date:  2008-02-15       Impact factor: 5.469

7.  Robust properties of membrane-embedded connector channel of bacterial virus phi29 DNA packaging motor.

Authors:  Peng Jing; Farzin Haque; Anne P Vonderheide; Carlo Montemagno; Peixuan Guo
Journal:  Mol Biosyst       Date:  2010-06-04

8.  Channel size conversion of Phi29 DNA-packaging nanomotor for discrimination of single- and double-stranded nucleic acids.

Authors:  Jia Geng; Shaoying Wang; Huaming Fang; Peixuan Guo
Journal:  ACS Nano       Date:  2013-03-25       Impact factor: 15.881

9.  Three-step channel conformational changes common to DNA packaging motors of bacterial viruses T3, T4, SPP1, and Phi29.

Authors:  Shaoying Wang; Zhouxiang Ji; Erfu Yan; Farzin Haque; Peixuan Guo
Journal:  Virology       Date:  2016-05-12       Impact factor: 3.616

10.  The oligomerization domain of VP3, the scaffolding protein of infectious bursal disease virus, plays a critical role in capsid assembly.

Authors:  Antonio Maraver; Ana Oña; Fernando Abaitua; Dolores González; Roberto Clemente; Jose A Ruiz-Díaz; Jose R Castón; Florencio Pazos; Jose F Rodriguez
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

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