Literature DB >> 12369195

Discovering lactic acid bacteria by genomics.

Todd Klaenhammer1, Eric Altermann, Fabrizio Arigoni, Alexander Bolotin, Fred Breidt, Jeffrey Broadbent, Raul Cano, Stephane Chaillou, Josef Deutscher, Mike Gasson, Maarten van de Guchte, Jean Guzzo, Axel Hartke, Trevor Hawkins, Pascal Hols, Robert Hutkins, Michiel Kleerebezem, Jan Kok, Oscar Kuipers, Mark Lubbers, Emmanuelle Maguin, Larry McKay, David Mills, Arjen Nauta, Ross Overbeek, Herman Pel, David Pridmore, Milton Saier, Douwe van Sinderen, Alexei Sorokin, James Steele, Daniel O'Sullivan, Willem de Vos, Bart Weimer, Monique Zagorec, Roland Siezen.   

Abstract

This review summarizes a collection of lactic acid bacteria that are now undergoing genomic sequencing and analysis. Summaries are presented on twenty different species, with each overview discussing the organisms fundamental and practical significance, environmental habitat, and its role in fermentation, bioprocessing, or probiotics. For those projects where genome sequence data were available by March 2002, summaries include a listing of key statistics and interesting genomic features. These efforts will revolutionize our molecular view of Gram-positive bacteria, as up to 15 genomes from the low GC content lactic acid bacteria are expected to be available in the public domain by the end of 2003. Our collective view of the lactic acid bacteria will be fundamentally changed as we rediscover the relationships and capabilities of these organisms through genomics.

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Year:  2002        PMID: 12369195     DOI: 10.1007/978-94-017-2029-8_3

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  57 in total

1.  Antibiotic resistance and probiotic properties of dominant lactic microflora from Tungrymbai, an ethnic fermented soybean food of India.

Authors:  Sharmila Thokchom; Santa Ram Joshi
Journal:  J Microbiol       Date:  2012-06-30       Impact factor: 3.422

2.  Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis.

Authors:  Balasubramanian Ganesan; Piotr Dobrowolski; Bart C Weimer
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

3.  Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.

Authors:  Eric Altermann; W Michael Russell; M Andrea Azcarate-Peril; Rodolphe Barrangou; B Logan Buck; Olivia McAuliffe; Nicole Souther; Alleson Dobson; Tri Duong; Michael Callanan; Sonja Lick; Alice Hamrick; Raul Cano; Todd R Klaenhammer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-25       Impact factor: 11.205

Review 4.  Evolutionary genomics of lactic acid bacteria.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  J Bacteriol       Date:  2006-11-03       Impact factor: 3.490

5.  CtsR is the master regulator of stress response gene expression in Oenococcus oeni.

Authors:  Cosette Grandvalet; Françoise Coucheney; Charlotte Beltramo; Jean Guzzo
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

6.  Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. paraplantarum, L. pentosus, and L. casei: prevalence of CO(2)-dependent auxotrophs and characterization of deficient arg genes in L. plantarum.

Authors:  Françoise Bringel; Jean-Claude Hubert
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

7.  Heat and osmotic stress responses of probiotic Lactobacillus rhamnosus HN001 (DR20) in relation to viability after drying.

Authors:  Jaya Prasad; Paul McJarrow; Pramod Gopal
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

8.  Quantitative analysis of diverse Lactobacillus species present in advanced dental caries.

Authors:  Roy Byun; Mangala A Nadkarni; Kim-Ly Chhour; F Elizabeth Martin; Nicholas A Jacques; Neil Hunter
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

9.  IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis.

Authors:  Roger S Bongers; Marcel H N Hoefnagel; Marjo J C Starrenburg; Marco A J Siemerink; John G A Arends; Jeroen Hugenholtz; Michiel Kleerebezem
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

10.  Regulation of Lactobacillus casei sorbitol utilization genes requires DNA-binding transcriptional activator GutR and the conserved protein GutM.

Authors:  Cristina Alcántara; Luz Adriana Sarmiento-Rubiano; Vicente Monedero; Josef Deutscher; Gaspar Pérez-Martínez; María J Yebra
Journal:  Appl Environ Microbiol       Date:  2008-08-01       Impact factor: 4.792

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