Literature DB >> 12368469

Increased noise as an effect of haploinsufficiency of the tumor-suppressor gene neurofibromatosis type 1 in vitro.

Ralf Kemkemer1, Stephanie Schrank, Walther Vogel, Hans Gruler, Dieter Kaufmann.   

Abstract

In human diseases related to tumor-suppressor genes, it is suggested that only the complete loss of the protein results in specific symptoms such as tumor formation, whereas simple reduction of protein quantity to 50%, called haploinsufficiency, essentially does not affect cellular behavior. Using a model of gene expression, it was presumed that haploinsufficiency is related to an increased noise in gene expression also in vivo [Cook, D. L., Gerber, A. N. & Tapscott, S. J. (1998) Proc. Natl. Acad. Sci. USA 95, 15641-15646]. Here, we demonstrate that haploinsufficiency of the tumor-suppressor gene neurofibromatosis type 1 (NF1) results in an increased variation of dendrite formation in cultured NF1 melanocytes. These morphological differences between NF1 and control melanocytes can be described by a mathematical model in which the cell is considered to be a self-organized automaton. The model describes the adjustment of the cells to a set point and includes a noise term that allows for stochastic processes. It describes the experimental data of control and NF1 melanocytes. In the cells haploinsufficient for NF1 we found an altered signal-to-noise ratio detectable as increased variation in dendrite formation in two of three investigated morphological parameters. We also suggest that in vivo NF1 haploinsufficiency results in an increased noise in cellular regulation and that this effect of haploinsufficiency may be found also in other tumor suppressors.

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Year:  2002        PMID: 12368469      PMCID: PMC129775          DOI: 10.1073/pnas.212386999

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  The contribution of noise to contrast invariance of orientation tuning in cat visual cortex.

Authors:  J S Anderson; I Lampl; D C Gillespie; D Ferster
Journal:  Science       Date:  2000-12-08       Impact factor: 47.728

2.  Cell orientation induced by extracellular signals.

Authors:  R Kemkemer; C Neidlinger-Wilke; L Claes; H Gruler
Journal:  Cell Biochem Biophys       Date:  1999       Impact factor: 2.194

Review 3.  Induction mechanism of a single gene molecule: stochastic or deterministic?

Authors:  M S Ko
Journal:  Bioessays       Date:  1992-05       Impact factor: 4.345

4.  Modeling stochastic gene expression: implications for haploinsufficiency.

Authors:  D L Cook; A N Gerber; S J Tapscott
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

5.  The melanocortin-1-receptor gene is the major freckle gene.

Authors:  M Bastiaens; J ter Huurne; N Gruis; W Bergman; R Westendorp; B J Vermeer; J N Bouwes Bavinck
Journal:  Hum Mol Genet       Date:  2001-08-01       Impact factor: 6.150

6.  New function for NF1 tumor suppressor.

Authors:  J Koivunen; H Ylä-Outinen; T Korkiamäki; S L Karvonen; M Pöyhönen; M Laato; J Karvonen; S Peltonen; J Peltonen
Journal:  J Invest Dermatol       Date:  2000-03       Impact factor: 8.551

7.  Rescue of a Drosophila NF1 mutant phenotype by protein kinase A.

Authors:  I The; G E Hannigan; G S Cowley; S Reginald; Y Zhong; J F Gusella; I K Hariharan; A Bernards
Journal:  Science       Date:  1997-05-02       Impact factor: 47.728

8.  Localization of neurofibromin to keratinocytes and melanocytes in developing rat and human skin.

Authors:  R Malhotra; N Ratner
Journal:  J Invest Dermatol       Date:  1994-05       Impact factor: 8.551

Review 9.  The neurofibromatosis type 1 gene and its protein product, neurofibromin.

Authors:  D H Gutmann; F S Collins
Journal:  Neuron       Date:  1993-03       Impact factor: 17.173

10.  Genetic and biochemical evidence that haploinsufficiency of the Nf1 tumor suppressor gene modulates melanocyte and mast cell fates in vivo.

Authors:  D A Ingram; F C Yang; J B Travers; M J Wenning; K Hiatt; S New; A Hood; K Shannon; D A Williams; D W Clapp
Journal:  J Exp Med       Date:  2000-01-03       Impact factor: 14.307

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  31 in total

1.  The selective values of alleles in a molecular network model are context dependent.

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Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

Review 2.  Noise in gene expression: origins, consequences, and control.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

3.  Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series.

Authors:  Sharad Bhartiya; Nikhil Chaudhary; K V Venkatesh; Francis J Doyle
Journal:  J R Soc Interface       Date:  2006-06-22       Impact factor: 4.118

4.  Cell orientation by a microgrooved substrate can be predicted by automatic control theory.

Authors:  Ralf Kemkemer; Simon Jungbauer; Dieter Kaufmann; Hans Gruler
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

5.  Additive, epistatic, and environmental effects through the lens of expression variability QTL in a twin cohort.

Authors:  Gang Wang; Ence Yang; Candice L Brinkmeyer-Langford; James J Cai
Journal:  Genetics       Date:  2013-12-02       Impact factor: 4.562

6.  Engineering stochasticity in gene expression.

Authors:  Jeffrey J Tabor; Travis S Bayer; Zachary B Simpson; Matthew Levy; Andrew D Ellington
Journal:  Mol Biosyst       Date:  2008-05-01

7.  Effects of transcriptional pausing on gene expression dynamics.

Authors:  Tiina Rajala; Antti Häkkinen; Shannon Healy; Olli Yli-Harja; Andre S Ribeiro
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

8.  Tuning and controlling gene expression noise in synthetic gene networks.

Authors:  Kevin F Murphy; Rhys M Adams; Xiao Wang; Gábor Balázsi; James J Collins
Journal:  Nucleic Acids Res       Date:  2010-03-08       Impact factor: 16.971

9.  Evidence of perturbations of cell cycle and DNA repair pathways as a consequence of human and murine NF1-haploinsufficiency.

Authors:  Alexander Pemov; Caroline Park; Karlyne M Reilly; Douglas R Stewart
Journal:  BMC Genomics       Date:  2010-03-22       Impact factor: 3.969

10.  Positive selection for elevated gene expression noise in yeast.

Authors:  Zhihua Zhang; Wenfeng Qian; Jianzhi Zhang
Journal:  Mol Syst Biol       Date:  2009-08-18       Impact factor: 11.429

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