Literature DB >> 12358549

A novel approach to the retrieval of structural and dynamic information from residual dipolar couplings using several oriented media in biomolecular NMR spectroscopy.

Joel R Tolman1.   

Abstract

The interpretation of residual dipolar couplings in terms of molecular properties of interest is complicated because of difficulties in separating structural and dynamic effects as well as the need to estimate alignment tensor parameters a priori. An approach is introduced here that allows many of these difficulties to be circumvented when data are acquired in multiple alignment media. The method allows the simultaneous extraction of both structural and dynamic information directly from the residual dipolar coupling data, in favorable cases even in the complete absence of prior structural knowledge. Application to the protein ubiquitin indicates greater amplitudes of internal motion than expected from traditional (15)N spin relaxation analysis.

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Year:  2002        PMID: 12358549     DOI: 10.1021/ja0261123

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  57 in total

1.  Correlated motions of successive amide N-H bonds in proteins.

Authors:  Philippe Pelupessy; Sapna Ravindranathan; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

2.  Protein structure prediction using sparse dipolar coupling data.

Authors:  Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu
Journal:  Nucleic Acids Res       Date:  2004-01-26       Impact factor: 16.971

3.  Determination of molecular alignment tensors without backbone resonance assignment: Aid to rapid analysis of protein-protein interactions.

Authors:  Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2003-09       Impact factor: 2.835

4.  Structure and disorder in the ribonuclease S-peptide probed by NMR residual dipolar couplings.

Authors:  Andrei T Alexandrescu; Richard A Kammerer
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

5.  Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases.

Authors:  Markus Zweckstetter; Gerhard Hummer; Ad Bax
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

6.  Scrutinizing molecular mechanics force fields on the submicrosecond timescale with NMR data.

Authors:  Oliver F Lange; David van der Spoel; Bert L de Groot
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

Review 7.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

8.  Residual dipolar couplings: are multiple independent alignments always possible?

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2010-12-24       Impact factor: 2.835

9.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

10.  Correlated dynamics between protein HN and HC bonds observed by NMR cross relaxation.

Authors:  Beat Vögeli; Lishan Yao
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

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