Literature DB >> 12354561

Microbial population genomics and ecology.

Edward F DeLong1.   

Abstract

The origins of biological complexity in microbial ecosystems are encoded within the collective genomes of the community. Cultivation-independent genomic studies provide direct access to the genomes of naturally occurring microbes, cultivated or not. Genome-enabled approaches are now significantly advancing current knowledge of genome content, diversity, population biology and evolution in natural microbial populations.

Mesh：

Year:  2002        PMID： 12354561     DOI： 10.1016/s1369-5274(02)00353-3

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  19 in total

1.  First genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenase.

Authors:  Peter Ricke; Michael Kube; Satoshi Nakagawa; Christoph Erkel; Richard Reinhardt; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

2.  Construction, analysis, and beta-glucanase screening of a bacterial artificial chromosome library from the large-bowel microbiota of mice.

Authors:  Jens Walter; Marco Mangold; Gerald W Tannock
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

3.  Environmental whole-genome amplification to access microbial populations in contaminated sediments.

Authors:  Carl B Abulencia; Denise L Wyborski; Joseph A Garcia; Mircea Podar; Wenqiong Chen; Sherman H Chang; Hwai W Chang; David Watson; Eoin L Brodie; Terry C Hazen; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

Review 4.  Metagenomics and the niche concept.

Authors:  Diana Marco
Journal:  Theory Biosci       Date:  2008-04-18       Impact factor: 1.919

5.  Actively growing bacteria in the inland sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis.

Authors:  Koji Hamasaki; Akito Taniguchi; Yuya Tada; Richard A Long; Farooq Azam
Journal:  Appl Environ Microbiol       Date:  2007-03-02       Impact factor: 4.792

6.  Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment.

Authors:  C O Jeon; W Park; P Padmanabhan; C DeRito; J R Snape; E L Madsen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-03       Impact factor: 11.205

7.  Molecular evidence for the evolution of metal homeostasis genes by lateral gene transfer in bacteria from the deep terrestrial subsurface.

Authors:  J M Coombs; T Barkay
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

8.  Molecular phylogenetic analysis of bacterial community and characterization of Cr(VI) reducers from the sediments of Tantloi hot spring, India.

Authors:  Preeti Jain; Hasan Mahmud Reza; Subrata Pal
Journal:  Aquat Biosyst       Date:  2014-09-02

9.  A single-cell view on the ecophysiology of anaerobic phototrophic bacteria.

Authors:  Niculina Musat; Hannah Halm; Bärbel Winterholler; Peter Hoppe; Sandro Peduzzi; Francois Hillion; Francois Horreard; Rudolf Amann; Bo B Jørgensen; Marcel M M Kuypers
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

10.  A novel bioinformatics strategy for function prediction of poorly-characterized protein genes obtained from metagenome analyses.

Authors:  Takashi Abe; Shigehiko Kanaya; Hiroshi Uehara; Toshimichi Ikemura
Journal:  DNA Res       Date:  2009-10-03       Impact factor: 4.458
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