Literature DB >> 12296699

Long-range interactions stabilize the fold of a non-natural oligomer.

Richard P Cheng1, William F DeGrado.   

Abstract

Toward designing nonbiological polymers that fold into predictable tertiary structures, we report a "beta-oligomer" composed of beta-amino acids that adopts a cooperatively folded structure. We have computationally designed a C(2)-symmetrical pair of interacting 14-helical beta-oligomers stabilized via long-range interhelical interactions and stapled together by a disulfide bond. The reduced (BHBred) and oxidized (BHBox) forms of the synthetic beta-oligomer represent the individual isolated helices and the two-helix bundle, respectively. We also prepared a third monomeric synthetic beta-oligomer (BHBmon) to avoid inadvertent disulfide formation during characterization. Circular dichroism spectroscopy revealed that BHBox showed a 2-fold increase in secondary structure, relative to the monohelical controls, BHBred and BHBmon. Further, BHBox showed a sigmoidal thermal unfolding curve with a per-residue van't Hoff enthalpy of approximately 0.7 kcal/(mol.residue), analogous to folded proteins. In contrast, BHBmon shows a broad thermal transition, typical of multistate unfolding for monomeric helices. Also, analytical ultracentrifugation showed that BHBmon and BHBox were monomeric at concentrations < or =800 and 280 microM, respectively. Therefore, the enhanced helicity of BHBox could be attributed to intramolecular helix-helix interactions.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12296699     DOI: 10.1021/ja020728a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  beta-Peptides as inhibitors of protein-protein interactions.

Authors:  Joshua A Kritzer; Olen M Stephens; Danielle A Guarracino; Samuel K Reznik; Alanna Schepartz
Journal:  Bioorg Med Chem       Date:  2005-01-03       Impact factor: 3.641

2.  Solution structure of a beta-peptide ligand for hDM2.

Authors:  Joshua A Kritzer; Michael E Hodsdon; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2005-03-30       Impact factor: 15.419

3.  Toward beta-amino acid proteins: a cooperatively folded beta-peptide quaternary structure.

Authors:  Jade X Qiu; E James Petersson; Erin E Matthews; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

Review 4.  Foldamers as versatile frameworks for the design and evolution of function.

Authors:  Catherine M Goodman; Sungwook Choi; Scott Shandler; William F DeGrado
Journal:  Nat Chem Biol       Date:  2007-05       Impact factor: 15.040

5.  High-resolution structure of a beta-peptide bundle.

Authors:  Douglas S Daniels; E James Petersson; Jade X Qiu; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-02-14       Impact factor: 15.419

6.  Mechanical stability of helical beta-peptides and a comparison of explicit and implicit solvent models.

Authors:  Clark A Miller; Samuel H Gellman; Nicholas L Abbott; Juan J de Pablo
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

7.  Distinctive circular dichroism signature for 14-helix-bundle formation by beta-peptides.

Authors:  William C Pomerantz; Tami L R Grygiel; Jonathan R Lai; Samuel H Gellman
Journal:  Org Lett       Date:  2008-04-09       Impact factor: 6.005

8.  Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure.

Authors:  Kelly L George; W Seth Horne
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

9.  Biophysical and structural characterization of a robust octameric beta-peptide bundle.

Authors:  Jessica L Goodman; E James Petersson; Douglas S Daniels; Jade X Qiu; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

10.  Detection and analysis of chimeric tertiary structures by backbone thioester exchange: packing of an alpha helix against an alpha/beta-peptide helix.

Authors:  Joshua L Price; Erik B Hadley; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.