Literature DB >> 12270108

ChickRH6: a chicken whole-genome radiation hybrid panel.

Mireille Morisson1, Alexandre Lemière, Sarah Bosc, Maxime Galan, Florence Plisson-Petit, Philippe Pinton, Chantal Delcros, Katia Fève, Frédérique Pitel, Valérie Fillon, Martine Yerle, Alain Vignal.   

Abstract

As a first step towards the development of radiation hybrid maps, we have produced a radiation hybrid panel in the chicken by fusing female embryonic diploid fibroblasts irradiated at 6,000 rads with HPRT-deficient hamster Wg3hCl2 cells. Due to the low retention frequency of the chicken fragments, a high number of clones was produced from which the best ones were selected. Thus, 452 fusion clones were tested for retention frequencies with a panel of 46 markers. Based on these results, 103 clones with a mean marker retention of 23.8% were selected for large scale culture to produce DNA in sufficient quantities for the genotyping of numerous markers. Retention frequency was tested again with the same 46 markers and the 90 best clones, with a final mean retention frequency of 21.9%, were selected for the final panel. This panel will be a valuable resource for fine mapping of markers and genes in the chicken, and will also help in building BAC contigs.

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Year:  2002        PMID: 12270108      PMCID: PMC2705459          DOI: 10.1186/1297-9686-34-4-521

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


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  26 in total

1.  Application of AFLP technology to radiation hybrid mapping.

Authors:  C Gorni; J L Williams; H C M Heuven; R Negrini; A Valentini; M J T van Eijk; D Waddington; M Zevenbergen; P Ajmone Marsan; J D Peleman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

2.  Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.

Authors:  Mireille Morisson; Carine Jiguet-Jiglaire; Sophie Leroux; Thomas Faraut; Suzanne Bardes; Katia Feve; Carine Genet; Frédérique Pitel; Denis Milan; Alain Vignal
Journal:  Mamm Genome       Date:  2004-09       Impact factor: 2.957

3.  A radiation hybrid map of chicken Chromosome 4.

Authors:  Tarik S K M Rabie; Richard P M A Crooijmans; Mireille Morisson; Joanna Andryszkiewicz; Jan J van der Poel; Alain Vignal; Martien A M Groenen
Journal:  Mamm Genome       Date:  2004-07       Impact factor: 2.957

Review 4.  Advanced technologies for genomic analysis in farm animals and its application for QTL mapping.

Authors:  Xiaoxiang Hu; Yu Gao; Chungang Feng; Qiuyue Liu; Xiaobo Wang; Zhuo Du; Qingsong Wang; Ning Li
Journal:  Genetica       Date:  2008-12-18       Impact factor: 1.082

5.  Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families.

Authors:  Hervé Tostivint; Lucille Joly; Isabelle Lihrmann; Caroline Parmentier; Alexis Lebon; Mireille Morisson; André Calas; Marc Ekker; Hubert Vaudry
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-07       Impact factor: 11.205

6.  Assignment of CCR7 gene to chicken chromosome 27 by radiation hybrid panel mapping.

Authors:  Yong Tian; Li-zhi Lu; Yan Fu; Zheng-rong Tao; Jun-da Shen; De-qian Wang; Ai-ping Yuan; Zhao-zheng Yin
Journal:  J Zhejiang Univ Sci B       Date:  2007-05       Impact factor: 3.066

7.  A duck RH panel and its potential for assisting NGS genome assembly.

Authors:  Man Rao; Mireille Morisson; Thomas Faraut; Suzanne Bardes; Katia Fève; Emmanuelle Labarthe; Valérie Fillon; Yinhua Huang; Ning Li; Alain Vignal
Journal:  BMC Genomics       Date:  2012-09-28       Impact factor: 3.969

8.  Integrative mapping analysis of chicken microchromosome 16 organization.

Authors:  Romain Solinhac; Sophie Leroux; Svetlana Galkina; Olympe Chazara; Katia Feve; Florence Vignoles; Mireille Morisson; Svetlana Derjusheva; Bertrand Bed'hom; Alain Vignal; Valérie Fillon; Frédérique Pitel
Journal:  BMC Genomics       Date:  2010-11-04       Impact factor: 3.969

9.  Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition.

Authors:  Daniel W Bellott; Helen Skaletsky; Tatyana Pyntikova; Elaine R Mardis; Tina Graves; Colin Kremitzki; Laura G Brown; Steve Rozen; Wesley C Warren; Richard K Wilson; David C Page
Journal:  Nature       Date:  2010-07-11       Impact factor: 49.962

10.  Radiation hybrid maps of Medaka chromosomes LG 12, 17, and 22.

Authors:  Feng Su; Yumi Osada; Marc Ekker; Mario Chevrette; Atsushi Shimizu; Shuichi Asakawa; Aiko Shiohama; Takashi Sasaki; Nobuyoshi Shimizu; Toshiyuki Yamanaka; Takao Sasado; Hiroshi Mitani; Robert Geisler; Hisato Kondoh; Makoto Furutani-Seiki
Journal:  DNA Res       Date:  2007-06-25       Impact factor: 4.458

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