Literature DB >> 12241395

Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures.

K-K Kunze1, R R Netz.   

Abstract

We investigate the complexation behavior between a semiflexible charged polymer and an oppositely charged sphere with parameters appropriate for the DNA-histone system. We determine the ground state of a simple free energy expression (which includes electrostatic interactions on a linear level) numerically and use symmetry arguments to divide the obtained DNA configuration into broad classes, thereby obtaining global phase diagrams. We pay specific attention to the effects of salt concentration, DNA length variation, DNA charge renormalization, and externally applied force on the obtained complex structures.

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Year:  2002        PMID: 12241395     DOI: 10.1103/PhysRevE.66.011918

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  13 in total

1.  Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling.

Authors:  Andrey G Cherstvy
Journal:  J Biol Phys       Date:  2011-01-18       Impact factor: 1.365

2.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

3.  Looping charged elastic rods: applications to protein-induced DNA loop formation.

Authors:  A G Cherstvy
Journal:  Eur Biophys J       Date:  2010-10-21       Impact factor: 1.733

4.  Global analysis of the ground-state wrapping conformation of a charged polymer on an oppositely charged nano-sphere.

Authors:  Hoda Boroudjerdi; Ali Naji; A Naji; R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2014-03-31       Impact factor: 1.890

5.  Quantitative Modeling of Nucleosome Unwrapping from Both Ends.

Authors:  Dengke Zhao; Jenny V Le; Michael A Darcy; Kyle Crocker; Michael G Poirier; Carlos Castro; Ralf Bundschuh
Journal:  Biophys J       Date:  2019-10-30       Impact factor: 4.033

6.  Ensembles of Breathing Nucleosomes: A Computational Study.

Authors:  Koen van Deelen; Helmut Schiessel; Lennart de Bruin
Journal:  Biophys J       Date:  2019-12-12       Impact factor: 4.033

7.  Theory for RNA folding, stretching, and melting including loops and salt.

Authors:  Thomas R Einert; Roland R Netz
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

8.  Salt-modulated structure of polyelectrolyte-macroion complex fibers.

Authors:  Hoda Boroudjerdi; Ali Naji; Roland R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-07-28       Impact factor: 1.890

9.  DNA on a tube: electrostatic contribution to stiffness.

Authors:  Zuojun Guo; Clifford Henry Taubes; Jee-Eun Oh; Louis J Maher; Udayan Mohanty
Journal:  J Phys Chem B       Date:  2008-12-18       Impact factor: 2.991

10.  Helical packaging of semiflexible polymers in bacteriophages.

Authors:  Ralf Metzler; Paul G Dommersnes
Journal:  Eur Biophys J       Date:  2004-02-26       Impact factor: 1.733

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