Literature DB >> 12238770

Formalin removal from archival tissue by critical point drying.

Sheng-Guo Fang1, Qiu-Hong Wan, Noboru Fujihara.   

Abstract

The extraction of high-quality nucleic acid may be problematic in formalin-fixed tissues because of cross-linking between proteins and DNA. Old fixed tissue specimens do produce fragmented DNA (<1.2 kb), which is only used for PCR amplification. Here we show that high molecular weight DNA (>194 kb) can be successfully extracted from fixed tissue samples (16-70 years old) by gradual dehydration and critical point drying. The reliability of extracted DNA was measured by its ability to serve as a template for the amplification of mtDNA fragments (403 and 1198 bp) and an nDNA fragment (1844 bp). In addition, fingerprinting analysis was performed using DNA from fixed human tissue to ensure the ability of extracted DNA to hybridize with the DNA probe. DNA derived by this method can be subject to amplification, complete digestion by restriction endonuclease, and hybridization.

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Year:  2002        PMID: 12238770     DOI: 10.2144/02333rr03

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  9 in total

1.  Detection of ALK gene rearrangements in formalin-fixed, paraffin-embedded tissue using a fluorescence in situ hybridization (FISH) probe: a search for optimum conditions of tissue archiving and preparation for FISH.

Authors:  Leonard Hwan Cheong Tan; Elaine Do; Siew Meng Chong; Evelyn Siew Chuan Koay
Journal:  Mol Diagn       Date:  2003

2.  DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution.

Authors:  Shan-Rong Shi; Ram Datar; Cheng Liu; Lin Wu; Zina Zhang; Richard J Cote; Clive R Taylor
Journal:  Histochem Cell Biol       Date:  2004-08-20       Impact factor: 4.304

3.  Conversions of formaldehyde-modified 2'-deoxyadenosine 5'-monophosphate in conditions modeling formalin-fixed tissue dehydration.

Authors:  Vladimir K Rait; Qingrong Zhang; Daniele Fabris; Jeffrey T Mason; Timothy J O'Leary
Journal:  J Histochem Cytochem       Date:  2005-08-22       Impact factor: 2.479

4.  The loss of genetic diversity in the Chinese paddlefish (Psephurus gladius Martens) as revealed by DNA fingerprinting.

Authors:  Xue-Chang Wu
Journal:  J Genet       Date:  2005-12       Impact factor: 1.166

Review 5.  Antigen retrieval immunohistochemistry: review and future prospects in research and diagnosis over two decades.

Authors:  Shan-Rong Shi; Yan Shi; Clive R Taylor
Journal:  J Histochem Cytochem       Date:  2011-01       Impact factor: 2.479

Review 6.  The changing epitome of species identification - DNA barcoding.

Authors:  M Ajmal Ali; Gábor Gyulai; Norbert Hidvégi; Balázs Kerti; Fahad M A Al Hemaid; Arun K Pandey; Joongku Lee
Journal:  Saudi J Biol Sci       Date:  2014-03-31       Impact factor: 4.219

7.  Extraction of amplifiable DNA from embalmed human cadaver tissue.

Authors:  Lindsay Gielda; Stefanie Rigg
Journal:  BMC Res Notes       Date:  2017-12-13

8.  The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

Authors:  M Thomas P Gilbert; Tamara Haselkorn; Michael Bunce; Juan J Sanchez; Sebastian B Lucas; Laurence D Jewell; Eric Van Marck; Michael Worobey
Journal:  PLoS One       Date:  2007-06-20       Impact factor: 3.240

9.  Evolution through cold and deep waters: the molecular phylogeny of the Lithodidae (Crustacea: Decapoda).

Authors:  Sally Hall; Sven Thatje
Journal:  Naturwissenschaften       Date:  2018-02-27
  9 in total

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