Literature DB >> 12235376

Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments.

Hideto Takami1, Yoshihiro Takaki, Ikuo Uchiyama.   

Abstract

Oceanobacillus iheyensis HTE831 is an alkaliphilic and extremely halotolerant Bacillus-related species isolated from deep-sea sediment. We present here the complete genome sequence of HTE831 along with analyses of genes required for adaptation to highly alkaline and saline environments. The genome consists of 3.6 Mb, encoding many proteins potentially associated with roles in regulation of intracellular osmotic pressure and pH homeostasis. The candidate genes involved in alkaliphily were determined based on comparative analysis with three Bacillus species and two other Gram-positive species. Comparison with the genomes of other major Gram-positive bacterial species suggests that the backbone of the genus Bacillus is composed of approximately 350 genes. This second genome sequence of an alkaliphilic Bacillus-related species will be useful in understanding life in highly alkaline environments and microbial diversity within the ubiquitous bacilli.

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Year:  2002        PMID: 12235376      PMCID: PMC137110          DOI: 10.1093/nar/gkf526

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

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Authors:  T Sakiyama; H Takami; N Ogasawara; S Kuhara; T Kozuki; K Doga; A Ohyama; K Horikoshi
Journal:  Biosci Biotechnol Biochem       Date:  2000-03       Impact factor: 2.043

2.  A novel bacterial gene-finding system with improved accuracy in locating start codons.

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Journal:  DNA Res       Date:  2001-06-30       Impact factor: 4.458

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Authors:  H Takami; C G Han; Y Takaki; E Ohtsubo
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

4.  A prokaryotic voltage-gated sodium channel.

Authors:  D Ren; B Navarro; H Xu; L Yue; Q Shi; D E Clapham
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5.  Biodiversity in deep-sea sites located near the south part of Japan.

Authors:  H Takami; K Kobata; T Nagahama; H Kobayashi; A Inoue; K Horikoshi
Journal:  Extremophiles       Date:  1999-05       Impact factor: 2.395

6.  Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge.

Authors:  J Lu; Y Nogi; H Takami
Journal:  FEMS Microbiol Lett       Date:  2001-12-18       Impact factor: 2.742

Review 7.  The Na(+)-dependence of alkaliphily in Bacillus.

Authors:  T A Krulwich; M Ito; A A Guffanti
Journal:  Biochim Biophys Acta       Date:  2001-05-01

8.  Whole genome sequencing of meticillin-resistant Staphylococcus aureus.

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Journal:  Lancet       Date:  2001-04-21       Impact factor: 79.321

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Authors:  J Nölling; G Breton; M V Omelchenko; K S Makarova; Q Zeng; R Gibson; H M Lee; J Dubois; D Qiu; J Hitti; Y I Wolf; R L Tatusov; F Sabathe; L Doucette-Stamm; P Soucaille; M J Daly; G N Bennett; E V Koonin; D R Smith
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

10.  Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.

Authors:  H Takami; K Nakasone; Y Takaki; G Maeno; R Sasaki; N Masui; F Fuji; C Hirama; Y Nakamura; N Ogasawara; S Kuhara; K Horikoshi
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

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  68 in total

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4.  Phylogenetic Profiling and Diversity of Bacterial Communities in the Death Valley, an Extreme Habitat in the Atacama Desert.

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5.  Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution.

Authors:  Thomas H Roberts; Jorn Hejgaard; Neil F W Saunders; Ricardo Cavicchioli; Paul M G Curmi
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6.  The origin of eukaryotes is suggested as the symbiosis of pyrococcus into gamma-proteobacteria by phylogenetic tree based on gene content.

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7.  Halotolerant aerobic heterotrophic bacteria from the Great Salt Plains of Oklahoma.

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9.  Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci.

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Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

10.  Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors:  Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

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