Literature DB >> 12234520

The FLEXGene repository: exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era.

Leonardo Brizuela1, Aaron Richardson, Gerald Marsischky, Joshua Labaer.   

Abstract

Thanks to the results of the multiple completed and ongoing genome sequencing projects and to the newly available recombination-based cloning techniques, it is now possible to build gene repositories with no precedent in their composition, formatting, and potential. This new type of gene repository is necessary to address the challenges imposed by the post-genomic era, i.e., experimentation on a genome-wide scale. We are building the FLEXGene (Full Length EXpression-ready) repository. This unique resource will contain clones representing the complete ORFeome of different organisms, including Homo sapiens as well as several pathogens and model organisms. It will consist of a comprehensive, characterized (sequence-verified), and arrayed gene repository. This resource will allow full exploitation of the genomic information by enabling genome-wide scale experimentation at the level of functional/phenotypic assays as well as at the level of protein expression, purification, and analysis. Here we describe the rationale and construction of this resource and focus on the data obtained from the Saccharomyces cerevisiae project.

Entities:  

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Year:  2002        PMID: 12234520     DOI: 10.1016/s0188-4409(02)00372-7

Source DB:  PubMed          Journal:  Arch Med Res        ISSN: 0188-4409            Impact factor:   2.235


  12 in total

1.  Site-specific recombinational cloning using gateway and in-fusion cloning schemes.

Authors:  Jaehong Park; Andrea L Throop; Joshua LaBaer
Journal:  Curr Protoc Mol Biol       Date:  2015-04-01

2.  Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation.

Authors:  Jaehong Park; Yanhui Hu; T V S Murthy; Fredrik Vannberg; Binghua Shen; Andreas Rolfs; Jessica E Hutti; Lewis C Cantley; Joshua Labaer; Ed Harlow; Leonardo Brizuela
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-31       Impact factor: 11.205

Review 3.  High-throughput cloning and expression library creation for functional proteomics.

Authors:  Fernanda Festa; Jason Steel; Xiaofang Bian; Joshua Labaer
Journal:  Proteomics       Date:  2013-04-05       Impact factor: 3.984

4.  Production and sequence validation of a complete full length ORF collection for the pathogenic bacterium Vibrio cholerae.

Authors:  Andreas Rolfs; Wagner R Montor; Sang Sun Yoon; Yanhui Hu; Bhupinder Bhullar; Fontina Kelley; Seamus McCarron; Daniel A Jepson; Binghua Shen; Elena Taycher; Stephanie E Mohr; Dongmei Zuo; Janice Williamson; John Mekalanos; Joshua Labaer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-12       Impact factor: 11.205

5.  A heritable switch in carbon source utilization driven by an unusual yeast prion.

Authors:  Jessica C S Brown; Susan Lindquist
Journal:  Genes Dev       Date:  2009-10-01       Impact factor: 11.361

6.  Construction of two recombination yeast two-hybrid vectors by in vitro recombination.

Authors:  Feng Guo; Yingtong Wang; Yu-Zhu Zhang
Journal:  Mol Biotechnol       Date:  2007-05       Impact factor: 2.860

7.  PlasmID: a centralized repository for plasmid clone information and distribution.

Authors:  Dongmei Zuo; Stephanie E Mohr; Yanhui Hu; Elena Taycher; Andreas Rolfs; Jason Kramer; Janice Williamson; Joshua LaBaer
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971

8.  Investigation into the use of C- and N-terminal GFP fusion proteins for subcellular localization studies using reverse transfection microarrays.

Authors:  Ella Palmer; Tom Freeman
Journal:  Comp Funct Genomics       Date:  2004

9.  Exploration of human ORFeome: high-throughput preparation of ORF clones and efficient characterization of their protein products.

Authors:  Takahiro Nagase; Hisashi Yamakawa; Shinichi Tadokoro; Daisuke Nakajima; Shinichi Inoue; Kei Yamaguchi; Yasuhide Itokawa; Reiko F Kikuno; Hisashi Koga; Osamu Ohara
Journal:  DNA Res       Date:  2008-03-02       Impact factor: 4.458

10.  A genome annotation-driven approach to cloning the human ORFeome.

Authors:  John E Collins; Charmain L Wright; Carol A Edwards; Matthew P Davis; James A Grinham; Charlotte G Cole; Melanie E Goward; Begoña Aguado; Meera Mallya; Younes Mokrab; Elizabeth J Huckle; David M Beare; Ian Dunham
Journal:  Genome Biol       Date:  2004-09-30       Impact factor: 13.583

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