Literature DB >> 12228728

Donor-bridge-acceptor energetics determine the distance dependence of electron tunneling in DNA.

Frederick D Lewis1, Jianqin Liu, Wilfried Weigel, Wolfgang Rettig, Igor V Kurnikov, David N Beratan.   

Abstract

Electron transfer (ET) processes in DNA are of current interest because of their involvement in oxidative strand cleavage reactions and their relevance to the development of molecular electronics. Two mechanisms have been identified for ET in DNA, a single-step tunneling process and a multistep charge-hopping process. The dynamics of tunneling reactions depend on both the distance between the electron donor and acceptor and the nature of the molecular bridge separating the donor and acceptor. In the case of protein and alkane bridges, the distance dependence is not strongly dependent on the properties of the donor and acceptor. In contrast, we show here that the distance decay of DNA ET rates varies markedly with the energetics of the donor and acceptor relative to the bridge. Specifically, we find that an increase in the energy of the bridge states by 0.25 eV (1 eV = 1.602 x 10(-19) J) relative to the donor and acceptor energies for photochemical oxidation of nucleotides, without changing the reaction free energy, results in an increase in the characteristic exponential distance decay constant for the ET rates from 0.71 to 1.1 A(-1). These results show that, in the small tunneling energy gap regime of DNA ET, the distance dependence is not universal; it varies strongly with the tunneling energy gap. These DNA ET reactions fill a "missing link" or transition regime between the large barrier (rapidly decaying) tunneling regime and the (slowly decaying) hopping regime in the general theory of bridge-mediated ET processes.

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Year:  2002        PMID: 12228728      PMCID: PMC130495          DOI: 10.1073/pnas.192432899

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins.

Authors:  F D Lewis; R L Letsinger; M R Wasielewski
Journal:  Acc Chem Res       Date:  2001-02       Impact factor: 22.384

Review 2.  Long-range charge transfer in DNA: transient structural distortions control the distance dependence.

Authors:  G B Schuster
Journal:  Acc Chem Res       Date:  2000-04       Impact factor: 22.384

3.  Femtosecond direct observation of charge transfer between bases in DNA.

Authors:  C Wan; T Fiebig; O Schiemann; J K Barton; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

4.  Direct measurement of hole transport dynamics in DNA.

Authors:  F D Lewis; X Liu; J Liu; S E Miller; R T Hayes; M R Wasielewski
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

5.  Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.

Authors:  P Jordan; P Fromme; H T Witt; O Klukas; W Saenger; N Krauss
Journal:  Nature       Date:  2001-06-21       Impact factor: 49.962

6.  Charge transport in DNA via thermally induced hopping.

Authors:  M Bixon; J Jortner
Journal:  J Am Chem Soc       Date:  2001-12-19       Impact factor: 15.419

7.  Direct observation of hole transfer through DNA by hopping between adenine bases and by tunnelling.

Authors:  B Giese; J Amaudrut; A K Köhler; M Spormann; S Wessely
Journal:  Nature       Date:  2001-07-19       Impact factor: 49.962

8.  On the apparently anomalous distance dependence of charge-transfer rates in 9-amino-6-chloro-2-methoxyacridine-modified DNA.

Authors:  S Hess; M Götz; W B Davis; M E Michel-Beyerle
Journal:  J Am Chem Soc       Date:  2001-10-17       Impact factor: 15.419

9.  Large On-Off Ratios and Negative Differential Resistance in a Molecular Electronic Device.

Authors: 
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

10.  Long-range oxidative damage to DNA: effects of distance and sequence.

Authors:  M E Núñez; D B Hall; J K Barton
Journal:  Chem Biol       Date:  1999-02
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  19 in total

1.  Charge transfer through DNA nanoscaled assembly programmable with DNA building blocks.

Authors:  Yasuko Osakada; Kiyohiko Kawai; Mamoru Fujitsuka; Tetsuro Majima
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

2.  Gold nanoparticle-protein arrays improve resolution for cryo-electron microscopy.

Authors:  Minghui Hu; Luping Qian; Raymond P Briñas; Elena S Lymar; Larisa Kuznetsova; James F Hainfeld
Journal:  J Struct Biol       Date:  2007-10-11       Impact factor: 2.867

3.  Impact of a single base pair substitution on the charge transfer rate along short DNA hairpins.

Authors:  Nicolas Renaud; Yuri A Berlin; Mark A Ratner
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

4.  Theoretical Study of Shallow Distance Dependence of Proton-Coupled Electron Transfer in Oligoproline Peptides.

Authors:  Pengfei Li; Alexander V Soudackov; Brian Koronkiewicz; James M Mayer; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-08-03       Impact factor: 15.419

5.  DNA charge transfer: Hot holes break the speed limit.

Authors:  D N Beratan; D H Waldeck
Journal:  Nat Chem       Date:  2016-10-21       Impact factor: 24.427

6.  Investigations of heme distortion, low-frequency vibrational excitations, and electron transfer in cytochrome c.

Authors:  Yuhan Sun; Abdelkrim Benabbas; Weiqiao Zeng; Jesse G Kleingardner; Kara L Bren; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

Review 7.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

8.  Direct observation of hole transfer through double-helical DNA over 100 A.

Authors:  Tadao Takada; Kiyohiko Kawai; Mamoru Fujitsuka; Tetsuro Majima
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-20       Impact factor: 11.205

9.  Charge equilibration between two distinct sites in double helical DNA.

Authors:  Sarah Delaney; Jae Yoo; Eric D A Stemp; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-09       Impact factor: 11.205

10.  First principles effective electronic couplings for hole transfer in natural and size-expanded DNA.

Authors:  Agostino Migliore; Stefano Corni; Daniele Varsano; Michael L Klein; Rosa Di Felice
Journal:  J Phys Chem B       Date:  2009-07-16       Impact factor: 2.991

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