Literature DB >> 12222813

Neuroanatomical algorithms for dendritic modelling.

Giorgio A Ascoli1.   

Abstract

The complexity and variability of dendritic morphology constitutes a fascinating challenge to the investigation of the structure-activity-function relationship in the nervous system. Computational modelling has recently emerged as a powerful approach for the quantitative anatomical characterization of dendrites. The key idea is to design a stochastic algorithm to generate digital structures that are statistically indistinguishable from those of real neurons of a given morphological class. The set of parameters used by this algorithm would then constitute a complete and accurate description of that morphological class. We review the strengths and weaknesses of the major types of algorithms used to model dendrogram properties, including those based on branch diameter and on distance from the soma. We also describe some approaches to the simulation of dendritic orientation and three-dimensional geometry. Finally, we discuss the environmental influences on dendritic morphology (especially the presence of axons, other neurons, and anatomical boundaries) and thus the need to include models of the tissue volume in the algorithmic description of dendrites.

Mesh:

Year:  2002        PMID: 12222813

Source DB:  PubMed          Journal:  Network        ISSN: 0954-898X            Impact factor:   1.273


  15 in total

1.  The DIADEM metric: comparing multiple reconstructions of the same neuron.

Authors:  Todd A Gillette; Kerry M Brown; Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2011-09

2.  Dynamics of outgrowth in a continuum model of neurite elongation.

Authors:  Bruce P Graham; Karen Lauchlan; Douglas R Mclean
Journal:  J Comput Neurosci       Date:  2006-02-20       Impact factor: 1.621

3.  Neural Query System: Data-mining from within the NEURON simulator.

Authors:  William W Lytton
Journal:  Neuroinformatics       Date:  2006

Review 4.  Successes and rewards in sharing digital reconstructions of neuronal morphology.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007

5.  Mathematical foundations of the dendritic growth models.

Authors:  José A Villacorta; Jorge Castro; Pilar Negredo; Carlos Avendaño
Journal:  J Math Biol       Date:  2007-07-24       Impact factor: 2.259

6.  Generating a model of the three-dimensional spatial distribution of neurons using density maps.

Authors:  Luis Cruz; Brigita Urbanc; Andrew Inglis; Douglas L Rosene; H E Stanley
Journal:  Neuroimage       Date:  2008-01-05       Impact factor: 6.556

7.  L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies.

Authors:  Ruggero Scorcioni; Sridevi Polavaram; Giorgio A Ascoli
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

8.  Non-homogeneous stereological properties of the rat hippocampus from high-resolution 3D serial reconstruction of thin histological sections.

Authors:  D Ropireddy; S E Bachus; G A Ascoli
Journal:  Neuroscience       Date:  2012-01-04       Impact factor: 3.590

9.  Automated Sholl analysis of digitized neuronal morphology at multiple scales: Whole cell Sholl analysis versus Sholl analysis of arbor subregions.

Authors:  Christopher G Langhammer; Michelle L Previtera; Eric S Sweet; Simranjeet S Sran; Maxine Chen; Bonnie L Firestein
Journal:  Cytometry A       Date:  2010-12       Impact factor: 4.355

10.  Morphological determinants of dendritic arborization neurons in Drosophila larva.

Authors:  Sumit Nanda; Ravi Das; Shatabdi Bhattacharjee; Daniel N Cox; Giorgio A Ascoli
Journal:  Brain Struct Funct       Date:  2017-11-01       Impact factor: 3.270

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.