Literature DB >> 12217506

Nutrient dynamics in the deep blue sea.

David M Karl1.   

Abstract

For more than a century, oceanographers have studied the interactions between the photosynthetic production of organic matter and nutrient dynamics in the sea. This research has been field-oriented and transdisciplinary, occurring at the intersections of research in microbiology, physics, analytical chemistry, cell physiology and ecology. The global database derived from this collective effort established a sound scientific understanding of nutrient dynamics and the vital role of microorganisms, both autotrophic and heterotrophic, in the coupled organic-matter production and decomposition cycles in the sea. However, novel approaches used over the past two decades, including new designs for field experiments, repeat field observations and remote-sensing capabilities, together with updated methods of sample analysis, have led to a revolution in our thinking about the mechanisms and controls of nutrient dynamics in the deep blue sea. Contemporary paradigms bear only partial resemblance to the dogma of the past, and are likely to evolve further as new data and new ideas are presented for open discussion and debate.

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Year:  2002        PMID: 12217506     DOI: 10.1016/s0966-842x(02)02430-7

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  36 in total

1.  Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean.

Authors:  Harriet Alexander; Mónica Rouco; Sheean T Haley; Samuel T Wilson; David M Karl; Sonya T Dyhrman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments.

Authors:  Jose Manuel García-Fernández; Nicole Tandeau de Marsac; Jesús Diez
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

3.  Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

Authors:  Christopher A Francis; Kathryn J Roberts; J Michael Beman; Alyson E Santoro; Brian B Oakley
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

4.  Seasonal depth-related gradients in virioplankton: standing stock and relationships with microbial communities in Lake Pavin (France).

Authors:  J Colombet; M Charpin; A Robin; C Portelli; C Amblard; H M Cauchie; T Sime-Ngando
Journal:  Microb Ecol       Date:  2009-05-28       Impact factor: 4.552

5.  Quantifying environmental adaptation of metabolic pathways in metagenomics.

Authors:  Tara A Gianoulis; Jeroen Raes; Prianka V Patel; Robert Bjornson; Jan O Korbel; Ivica Letunic; Takuji Yamada; Alberto Paccanaro; Lars J Jensen; Michael Snyder; Peer Bork; Mark B Gerstein
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-22       Impact factor: 11.205

6.  The trophic tapestry of the sea.

Authors:  Matthew J Church
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-09       Impact factor: 11.205

7.  Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Authors:  Frank O Aylward; John M Eppley; Jason M Smith; Francisco P Chavez; Christopher A Scholin; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

8.  Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities.

Authors:  Margaret F Romine; Dmitry A Rodionov; Yukari Maezato; Andrei L Osterman; William C Nelson
Journal:  ISME J       Date:  2017-02-10       Impact factor: 10.302

9.  Pattern and synchrony of gene expression among sympatric marine microbial populations.

Authors:  Elizabeth A Ottesen; Curtis R Young; John M Eppley; John P Ryan; Francisco P Chavez; Christopher A Scholin; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-23       Impact factor: 11.205

Review 10.  Microbial oceanography and the Hawaii Ocean Time-series programme.

Authors:  David M Karl; Matthew J Church
Journal:  Nat Rev Microbiol       Date:  2014-08-26       Impact factor: 60.633

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