Literature DB >> 12206713

Cell population modelling of yeast glycolytic oscillations.

Michael A Henson1, Dirk Müller, Matthias Reuss.   

Abstract

We investigated a cell-population modelling technique in which the population is constructed from an ensemble of individual cell models. The average value or the number distribution of any intracellular property captured by the individual cell model can be calculated by simulation of a sufficient number of individual cells. The proposed method is applied to a simple model of yeast glycolytic oscillations where synchronization of the cell population is mediated by the action of an excreted metabolite. We show that smooth one-dimensional distributions can be obtained with ensembles comprising 1000 individual cells. Random variations in the state and/or structure of individual cells are shown to produce complex dynamic behaviours which cannot be adequately captured by small ensembles.

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Year:  2002        PMID: 12206713      PMCID: PMC1223012          DOI: 10.1042/BJ20021051

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  21 in total

1.  How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.

Authors:  M Bier; B M Bakker; H V Westerhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Effect of cellular interaction on glycolytic oscillations in yeast: a theoretical investigation.

Authors:  J Wolf; R Heinrich
Journal:  Biochem J       Date:  2000-01-15       Impact factor: 3.857

3.  Stabilization of energy charge, generation of oscillations and multiple steady states in energy metabolism as a result of purely stoichiometric regulation.

Authors:  E E Sel'kov
Journal:  Eur J Biochem       Date:  1975-11-01

4.  PHASE RELATIONSHIP OF GLYCOLYTIC INTERMEDIATES IN YEAST CELLS WITH OSCILLATORY METABOLIC CONTROL.

Authors:  A BETZ; B CHANCE
Journal:  Arch Biochem Biophys       Date:  1965-03       Impact factor: 4.013

5.  Metabolic coupling and synchronization of NADH oscillations in yeast cell populations.

Authors:  A K Ghosh; B Chance; E K Pye
Journal:  Arch Biochem Biophys       Date:  1971-07       Impact factor: 4.013

6.  Oscillations of glycolytic intermediates in yeast cells.

Authors:  A Ghosh; B Chance
Journal:  Biochem Biophys Res Commun       Date:  1964-06-01       Impact factor: 3.575

7.  Dissipative structures for an allosteric model. Application to glycolytic oscillations.

Authors:  A Goldbeter; R Lefever
Journal:  Biophys J       Date:  1972-10       Impact factor: 4.033

8.  Full-scale model of glycolysis in Saccharomyces cerevisiae.

Authors:  F Hynne; S Danø; P G Sørensen
Journal:  Biophys Chem       Date:  2001-12-11       Impact factor: 2.352

9.  Long term oscillation in glycolysis.

Authors:  J Das; H G Busse
Journal:  J Biochem       Date:  1985-03       Impact factor: 3.387

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  6 in total

1.  An equation-free approach to analyzing heterogeneous cell population dynamics.

Authors:  Katherine A Bold; Yu Zou; Ioannis G Kevrekidis; Michael A Henson
Journal:  J Math Biol       Date:  2007-04-11       Impact factor: 2.259

2.  Stem cell modeling: From gene networks to cell populations.

Authors:  Jincheng Wu; Mahboubeh Rahmati Rostami; Emmanuel S Tzanakakis
Journal:  Curr Opin Chem Eng       Date:  2013-02-01       Impact factor: 5.163

Review 3.  Estimation methods for heterogeneous cell population models in systems biology.

Authors:  Steffen Waldherr
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

Review 4.  Synchronisation of glycolytic activity in yeast cells.

Authors:  Marcus J B Hauser
Journal:  Curr Genet       Date:  2021-10-11       Impact factor: 3.886

5.  Heterogeneity reduces sensitivity of cell death for TNF-stimuli.

Authors:  Monica Schliemann; Eric Bullinger; Steffen Borchers; Frank Allgöwer; Rolf Findeisen; Peter Scheurich
Journal:  BMC Syst Biol       Date:  2011-12-28

6.  Desynchronisation of glycolytic oscillations in yeast cell populations.

Authors:  André Weber; Yury Prokazov; Werner Zuschratter; Marcus J B Hauser
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

  6 in total

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