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Literature DB >> 12195024

Plant proteomics: BLASTing out of a MudPIT.

Julian P Whitelegge¹.

Abstract

Mesh：

Substances：
Plant Proteins
Proteome

Year: 2002 PMID： 12195024 PMCID： PMC129307 DOI： 10.1073/pnas.192449199

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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20 in total

Review 1. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Authors: D L Black
Journal: Cell Date: 2000-10-27 Impact factor: 41.582

2. An accurate mass tag strategy for quantitative and high-throughput proteome measurements.

Authors: Richard D Smith; Gordon A Anderson; Mary S Lipton; Ljiljana Pasa-Tolic; Yufeng Shen; Thomas P Conrads; Timothy D Veenstra; Harold R Udseth
Journal: Proteomics Date: 2002-05 Impact factor: 3.984

Review 3. Measuring gene expression by quantitative proteome analysis.

Authors: S P Gygi; B Rist; R Aebersold
Journal: Curr Opin Biotechnol Date: 2000-08 Impact factor: 9.740

4. Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm.

Authors: X Ye; S Al-Babili; A Klöti; J Zhang; P Lucca; P Beyer; I Potrykus
Journal: Science Date: 2000-01-14 Impact factor: 47.728

5. Protein identification by mass profile fingerprinting.

Authors: P James; M Quadroni; E Carafoli; G Gonnet
Journal: Biochem Biophys Res Commun Date: 1993-08-31 Impact factor: 3.575

6. Direct analysis of protein complexes using mass spectrometry.

Authors: A J Link; J Eng; D M Schieltz; E Carmack; G J Mize; D R Morris; B M Garvik; J R Yates
Journal: Nat Biotechnol Date: 1999-07 Impact factor: 54.908

7. A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Authors: Jun Yu; Songnian Hu; Jun Wang; Gane Ka-Shu Wong; Songgang Li; Bin Liu; Yajun Deng; Li Dai; Yan Zhou; Xiuqing Zhang; Mengliang Cao; Jing Liu; Jiandong Sun; Jiabin Tang; Yanjiong Chen; Xiaobing Huang; Wei Lin; Chen Ye; Wei Tong; Lijuan Cong; Jianing Geng; Yujun Han; Lin Li; Wei Li; Guangqiang Hu; Xiangang Huang; Wenjie Li; Jian Li; Zhanwei Liu; Long Li; Jianping Liu; Qiuhui Qi; Jinsong Liu; Li Li; Tao Li; Xuegang Wang; Hong Lu; Tingting Wu; Miao Zhu; Peixiang Ni; Hua Han; Wei Dong; Xiaoyu Ren; Xiaoli Feng; Peng Cui; Xianran Li; Hao Wang; Xin Xu; Wenxue Zhai; Zhao Xu; Jinsong Zhang; Sijie He; Jianguo Zhang; Jichen Xu; Kunlin Zhang; Xianwu Zheng; Jianhai Dong; Wanyong Zeng; Lin Tao; Jia Ye; Jun Tan; Xide Ren; Xuewei Chen; Jun He; Daofeng Liu; Wei Tian; Chaoguang Tian; Hongai Xia; Qiyu Bao; Gang Li; Hui Gao; Ting Cao; Juan Wang; Wenming Zhao; Ping Li; Wei Chen; Xudong Wang; Yong Zhang; Jianfei Hu; Jing Wang; Song Liu; Jian Yang; Guangyu Zhang; Yuqing Xiong; Zhijie Li; Long Mao; Chengshu Zhou; Zhen Zhu; Runsheng Chen; Bailin Hao; Weimou Zheng; Shouyi Chen; Wei Guo; Guojie Li; Siqi Liu; Ming Tao; Jian Wang; Lihuang Zhu; Longping Yuan; Huanming Yang
Journal: Science Date: 2002-04-05 Impact factor: 47.728

8. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors: Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal: Science Date: 2002-04-05 Impact factor: 47.728

9. Proteomic survey of metabolic pathways in rice.

Authors: Antonius Koller; Michael P Washburn; B Markus Lange; Nancy L Andon; Cosmin Deciu; Paul A Haynes; Lara Hays; David Schieltz; Ryan Ulaszek; Jing Wei; Dirk Wolters; John R Yates
Journal: Proc Natl Acad Sci U S A Date: 2002-08-05 Impact factor: 11.205

Plant proteomics: BLASTing out of a MudPIT.

Review 1. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

2. An accurate mass tag strategy for quantitative and high-throughput proteome measurements.

Review 3. Measuring gene expression by quantitative proteome analysis.

4. Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm.

5. Protein identification by mass profile fingerprinting.

6. Direct analysis of protein complexes using mass spectrometry.

7. A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

8. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

9. Proteomic survey of metabolic pathways in rice.

10. Virtual rice: Japan sets up the Rice Simulator Project to create an in silico rice plant.

1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins.

2. Integrated analyses of the rice secretome.

3. NdhP and NdhQ: two novel small subunits of the cyanobacterial NDH-1 complex.

Review 4. Integral membrane proteins and bilayer proteomics.

5. Thylakoid membrane proteomics.

6. Targeting a Subset of the Membrane Proteome for Top-Down Mass Spectrometry: Introducing the Proteolipidome.