Literature DB >> 12195021

SAGE Genie: a suite with panoramic view of gene expression.

Peng Liang1.   

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Year:  2002        PMID： 12195021      PMCID： PMC129301          DOI： 10.1073/pnas.192436299

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  9 in total

1.  Gene expression profile analysis by DNA microarrays: promise and pitfalls.

Authors:  H C King; A A Sinha
Journal:  JAMA       Date:  2001-11-14       Impact factor: 56.272

Review 2.  DNA microarrays and beyond: completing the journey from tissue to cell.

Authors:  J C Mills; K A Roth; R L Cagan; J I Gordon
Journal:  Nat Cell Biol       Date:  2001-08       Impact factor: 28.824

3.  A quantitative evaluation of SAGE.

Authors:  J Stollberg; J Urschitz; Z Urban; C D Boyd
Journal:  Genome Res       Date:  2000-08       Impact factor: 9.043

4.  An anatomy of normal and malignant gene expression.

Authors:  Kathy Boon; Elisson C Osorio; Susan F Greenhut; Carl F Schaefer; Jennifer Shoemaker; Kornelia Polyak; Patrice J Morin; Kenneth H Buetow; Robert L Strausberg; Sandro J De Souza; Gregory J Riggins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

5.  Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.

Authors:  P Liang; A B Pardee
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

6.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

7.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

8.  Using the transcriptome to annotate the genome.

Authors:  Saurabh Saha; Andrew B Sparks; Carlo Rago; Viatcheslav Akmaev; Clarence J Wang; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

Review 9.  Regulation of p53 downstream genes.

Authors:  W S el-Deiry
Journal:  Semin Cancer Biol       Date:  1998       Impact factor: 15.707
  9 in total
  13 in total

1.  The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.

Authors:  Cécile Fizames; Stéphane Muños; Céline Cazettes; Philippe Nacry; Jossia Boucherez; Frédéric Gaymard; David Piquemal; Valérie Delorme; Thérèse Commes; Patrick Doumas; Richard Cooke; Jacques Marti; Hervé Sentenac; Alain Gojon
Journal:  Plant Physiol       Date:  2004-01       Impact factor: 8.340

2.  The maize root transcriptome by serial analysis of gene expression.

Authors:  V Poroyko; L G Hejlek; W G Spollen; G K Springer; H T Nguyen; R E Sharp; H J Bohnert
Journal:  Plant Physiol       Date:  2005-06-17       Impact factor: 8.340

3.  SGDI: system for genomic data integration.

Authors:  V J Carey; J Gentry; R Sarkar; D Gentleman; S Ramaswamy
Journal:  Pac Symp Biocomput       Date:  2008

4.  Gill transcriptome response to changes in environmental calcium in the green spotted puffer fish.

Authors:  Patrícia Is Pinto; Hideo Matsumura; Michael As Thorne; Deborah M Power; Ryohei Terauchi; Richard Reinhardt; Adelino Vm Canário
Journal:  BMC Genomics       Date:  2010-08-17       Impact factor: 3.969

5.  hSAGEing: an improved SAGE-based software for identification of human tissue-specific or common tumor markers and suppressors.

Authors:  Cheng-Hong Yang; Li-Yeh Chuang; Tsung-Mu Shih; Hsueh-Wei Chang
Journal:  PLoS One       Date:  2010-12-17       Impact factor: 3.240

6.  Extract-SAGE: an integrated platform for cross-analysis and GA-based selection of SAGE data.

Authors:  Cheng-Hong Yang; Tsung-Mu Shihl; Yu-Chen Hung; Hsueh-Wei Chang; Li-Yeh Chuang
Journal:  Bioinformation       Date:  2009-02-27

7.  A molecular signature of epithelial host defense: comparative gene expression analysis of cultured bronchial epithelial cells and keratinocytes.

Authors:  Joost B Vos; Nicole A Datson; Antoine H van Kampen; Angela C Luyf; Renate M Verhoosel; Patrick L Zeeuwen; Diana Olthuis; Klaus F Rabe; Joost Schalkwijk; Pieter S Hiemstra
Journal:  BMC Genomics       Date:  2006-01-18       Impact factor: 3.969

8.  Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Authors:  Abdel Aouacheria; Vincent Navratil; Audrey Barthelaix; Dominique Mouchiroud; Christian Gautier
Journal:  BMC Genomics       Date:  2006-04-26       Impact factor: 3.969

9.  Modeling Sage data with a truncated gamma-Poisson model.

Authors:  Helene H Thygesen; Aeilko H Zwinderman
Journal:  BMC Bioinformatics       Date:  2006-03-20       Impact factor: 3.169

10.  Gonadotropin-releasing hormone regulates expression of the DNA damage repair gene, Fanconi anemia A, in pituitary gonadotroph cells.

Authors:  Rachel Larder; Lynda Chang; Michael Clinton; Pamela Brown
Journal:  Biol Reprod       Date:  2004-05-05       Impact factor: 4.285
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